RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 ZSCAN29Q8IWY8 852 aaPredicted RBP24.43■■□□□ 1.5
TPM1-208ENST00000404484 CCDC144CPQ8IYA2 1237 aa24.43■■□□□ 1.5
TPM1-208ENST00000404484 CRACR2BQ8N4Y2 399 aaPredicted RBP24.43■■□□□ 1.5
TPM1-208ENST00000404484 TRIM34Q9BYJ4 488 aa24.43■■□□□ 1.5
TPM1-208ENST00000404484 UBE2Q2LH0YL09 131 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 IFNAR1P17181 557 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 TCP10Q12799 353 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 TTLL12Q14166 644 aaPredicted RBP24.42■■□□□ 1.5
TPM1-208ENST00000404484 PPP4R3BQ5MIZ7 849 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 FOXP4Q8IVH2 680 aaPredicted RBP24.42■■□□□ 1.5
TPM1-208ENST00000404484 CDAN1Q8IWY9 1227 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 TEPSINQ96N21 525 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 TMEM39BQ9GZU3 492 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 FAM217BQ9NTX9 383 aaPredicted RBP24.42■■□□□ 1.5
TPM1-208ENST00000404484 FZD1Q9UP38 647 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 MYH8P13535 1937 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 NMT2O60551 498 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 NTRK3Q16288 839 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 SUPT20HL1Q3ZLR7 823 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 RCSD1Q6JBY9 416 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 RGMBQ6NW40 437 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 TRIM22Q8IYM9 498 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 CTCFLQ8NI51 663 aaPredicted RBP24.42■■□□□ 1.5
TPM1-208ENST00000404484 WASF1Q92558 559 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 CCDC17Q96LX7 622 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 MAP3K14Q99558 947 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 IL17RBQ9NRM6 502 aa24.42■■□□□ 1.5
TPM1-208ENST00000404484 DTNBO60941 627 aa24.41■■□□□ 1.5
TPM1-208ENST00000404484 TNNI2P48788 182 aa24.41■■□□□ 1.5
TPM1-208ENST00000404484 SSRP1Q08945 709 aaKnown RBP24.41■■□□□ 1.5
TPM1-208ENST00000404484 TROAPQ12815 778 aa24.41■■□□□ 1.5
TPM1-208ENST00000404484 FDPSP14324 419 aaKnown RBP24.4■■□□□ 1.5
TPM1-208ENST00000404484 KIF5BP33176 963 aa24.4■■□□□ 1.5
TPM1-208ENST00000404484 ZNF157P51786 506 aaPredicted RBP24.4■■□□□ 1.5
TPM1-208ENST00000404484 ZFPM1Q8IX07 1006 aa24.4■■□□□ 1.5
TPM1-208ENST00000404484 AOC2O75106 756 aa24.39■■□□□ 1.5
TPM1-208ENST00000404484 FMNL1O95466 1100 aaPredicted RBP24.39■■□□□ 1.5
TPM1-208ENST00000404484 SHMT1P34896 483 aa24.39■■□□□ 1.5
TPM1-208ENST00000404484 FAM83AQ86UY5 434 aa24.39■■□□□ 1.5
TPM1-208ENST00000404484 FAM151AQ8WW52 585 aa24.39■■□□□ 1.5
TPM1-208ENST00000404484 C8orf76Q96K31 380 aa24.39■■□□□ 1.5
TPM1-208ENST00000404484 ZSCAN16Q9H4T2 348 aaPredicted RBP24.39■■□□□ 1.5
TPM1-208ENST00000404484 DDTLA6NHG4 134 aaPredicted RBP24.38■■□□□ 1.49
TPM1-208ENST00000404484 MCTP1Q6DN14 999 aa24.38■■□□□ 1.49
TPM1-208ENST00000404484 ARMC9Q7Z3E5 817 aa24.38■■□□□ 1.49
TPM1-208ENST00000404484 METTL16Q86W50 562 aaKnown RBP24.38■■□□□ 1.49
TPM1-208ENST00000404484 PNMA1Q8ND90 353 aa24.38■■□□□ 1.49
TPM1-208ENST00000404484 STX8Q9UNK0 236 aa24.38■■□□□ 1.49
TPM1-208ENST00000404484 SSC5DA1L4H1 1573 aa24.38■■□□□ 1.49
TPM1-208ENST00000404484 PAPPA2Q9BXP8 1791 aa24.38■■□□□ 1.49
TPM1-208ENST00000404484 FAM155AB1AL88 458 aaPredicted RBP24.37■■□□□ 1.49
TPM1-208ENST00000404484 NOVP48745 357 aa24.37■■□□□ 1.49
TPM1-208ENST00000404484 PPP1R12BO60237 982 aaPredicted RBP24.37■■□□□ 1.49
TPM1-208ENST00000404484 TOP1P11387 765 aaKnown RBP24.37■■□□□ 1.49
TPM1-208ENST00000404484 GNAQP50148 359 aa24.37■■□□□ 1.49
TPM1-208ENST00000404484 SH3BP5LQ7L8J4 393 aa24.37■■□□□ 1.49
TPM1-208ENST00000404484 CCDC102AQ96A19 550 aa24.37■■□□□ 1.49
TPM1-208ENST00000404484 ZIC5Q96T25 663 aa24.37■■□□□ 1.49
TPM1-208ENST00000404484 SLC26A6Q9BXS9 759 aa24.37■■□□□ 1.49
TPM1-208ENST00000404484 HERC5Q9UII4 1024 aaKnown RBP24.37■■□□□ 1.49
TPM1-208ENST00000404484 SIPA1L1O43166 1804 aa24.36■■□□□ 1.49
TPM1-208ENST00000404484 USP2O75604 605 aaPredicted RBP24.36■■□□□ 1.49
TPM1-208ENST00000404484 MAP2K2P36507 400 aa24.36■■□□□ 1.49
TPM1-208ENST00000404484 AKAP17AQ02040 695 aaKnown RBP24.36■■□□□ 1.49
TPM1-208ENST00000404484 MAP3K11Q16584 847 aa24.36■■□□□ 1.49
TPM1-208ENST00000404484 CSPP1Q1MSJ5 1256 aa24.36■■□□□ 1.49
TPM1-208ENST00000404484 LDLRAD1Q5T700 205 aa24.36■■□□□ 1.49
TPM1-208ENST00000404484 PHKBQ93100 1093 aa24.36■■□□□ 1.49
TPM1-208ENST00000404484 CSRNP1Q96S65 589 aa24.36■■□□□ 1.49
TPM1-208ENST00000404484 RNF26Q9BY78 433 aaPredicted RBP24.36■■□□□ 1.49
TPM1-208ENST00000404484 DEXIO95424 95 aa24.35■■□□□ 1.49
TPM1-208ENST00000404484 AKR1B1P15121 316 aa24.35■■□□□ 1.49
TPM1-208ENST00000404484 TRIM29Q14134 588 aa24.35■■□□□ 1.49
TPM1-208ENST00000404484 SKOR2Q2VWA4 1001 aaPredicted RBP24.35■■□□□ 1.49
TPM1-208ENST00000404484 TMTC3Q6ZXV5 915 aa24.35■■□□□ 1.49
TPM1-208ENST00000404484 FBXO18Q8NFZ0 1043 aa24.35■■□□□ 1.49
TPM1-208ENST00000404484 CEP95Q96GE4 821 aa24.35■■□□□ 1.49
TPM1-208ENST00000404484 TMEM47Q9BQJ4 181 aa24.35■■□□□ 1.49
TPM1-208ENST00000404484 ALG1Q9BT22 464 aa24.35■■□□□ 1.49
TPM1-208ENST00000404484 IGKV6D-41A0A0C4DH26 115 aa24.34■■□□□ 1.49
TPM1-208ENST00000404484 PPFIA3O75145 1194 aa24.34■■□□□ 1.49
TPM1-208ENST00000404484 MTMR4Q9NYA4 1195 aa24.34■■□□□ 1.49
TPM1-208ENST00000404484 RBM27Q9P2N5 1060 aaKnown RBP24.34■■□□□ 1.49
TPM1-208ENST00000404484 SLC10A3P09131 477 aa24.33■■□□□ 1.49
TPM1-208ENST00000404484 HSPA1AP0DMV8 641 aaKnown RBP24.33■■□□□ 1.49
TPM1-208ENST00000404484 HSPA1BP0DMV9 641 aaKnown RBP24.33■■□□□ 1.49
TPM1-208ENST00000404484 NOGQ13253 232 aa24.33■■□□□ 1.49
TPM1-208ENST00000404484 GRM4Q14833 912 aa24.33■■□□□ 1.49
TPM1-208ENST00000404484 CERKLQ49MI3 558 aaPredicted RBP24.33■■□□□ 1.49
TPM1-208ENST00000404484 TATDN1Q6P1N9 297 aa24.33■■□□□ 1.49
TPM1-208ENST00000404484 NBPF11Q86T75 865 aa24.33■■□□□ 1.49
TPM1-208ENST00000404484 DNAJC18Q9H819 358 aa24.33■■□□□ 1.49
TPM1-208ENST00000404484 WBP1LQ9NX94 342 aa24.33■■□□□ 1.49
TPM1-208ENST00000404484 TTLL1O95922 423 aa24.33■■□□□ 1.48
TPM1-208ENST00000404484 RESTQ13127 1097 aa24.33■■□□□ 1.48
TPM1-208ENST00000404484 FERMT3Q86UX7 667 aa24.33■■□□□ 1.48
TPM1-208ENST00000404484 RASAL3Q86YV0 1011 aa24.33■■□□□ 1.48
TPM1-208ENST00000404484 LZTS2Q9BRK4 669 aa24.33■■□□□ 1.48
TPM1-208ENST00000404484 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.33■■□□□ 1.48
TPM1-208ENST00000404484 GREB1LQ9C091 1923 aaPredicted RBP24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms