RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SLMAPQ14BN4 828 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 RRAGAQ7L523 313 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 USP28Q96RU2 1077 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 EFCC1Q9HA90 598 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 LRRD1A4D1F6 860 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 PSDA5PKW4 1024 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 RNF40O75150 1001 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 CALCRLQ16602 461 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 TYW1BQ6NUM6 668 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 ABTB1Q969K4 478 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 HAUS4Q9H6D7 363 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 ZSWIM6Q9HCJ5 1215 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 PEG3Q9GZU2 1588 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 RGS12O14924 1447 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 GOLGA8KD6RF30 607 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 PFKFB2O60825 505 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 ITIH3Q06033 890 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 PPP1R21Q6ZMI0 780 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 DYMQ7RTS9 669 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 LRRC8AQ8IWT6 810 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 ABCC10Q5T3U5 1492 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 LCA5Q86VQ0 697 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 GABPB2Q8TAK5 448 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 ZNF594Q96JF6 807 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 MED4Q9NPJ6 270 aa11.33□□□□□ -0.6
LIMCH1-203ENST00000396595 TCP1P17987 556 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 DNM2P50570 870 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 RASSF2P50749 326 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 LRMPQ12912 555 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 NCAPH2Q6IBW4 605 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 C2CD5Q86YS7 1000 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 FAM207AQ9NSI2 230 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 JAG2Q9Y219 1238 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 CFAP43Q8NDM7 1665 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 ZNF532Q9HCE3 1301 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 FRMD3A2A2Y4 597 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 EXOC3O60645 756 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 KRT15P19012 456 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 CTDSPL2Q05D32 466 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 NT5C3AQ9H0P0 336 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 AMFRQ9UKV5 643 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 HMGB1P1B2RPK0 211 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 I3L4J1 428 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 STK10O94804 968 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 SLC8A3P57103 927 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 MUM1Q2TAK8 710 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 KCNJ18B7U540 433 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 RGS16O15492 202 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 ZAP70P43403 619 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 GNGT1P63211 74 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 SP4Q02446 784 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 TRPC3Q13507 836 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 KCNJ12Q14500 433 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 NOSTRINQ8IVI9 506 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 AFAP1L2Q8N4X5 818 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 MRRFQ96E11 262 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 TXNDC9O14530 226 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 DMTNQ08495 405 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 STRN3Q13033 797 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 ANKRD20A3Q5VUR7 823 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 TSC1Q92574 1164 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 STAMQ92783 540 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 BLZF1Q9H2G9 400 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 C19orf44Q9H6X5 657 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 HOMER3Q9NSC5 361 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 VPS54Q9P1Q0 977 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 BAIAP2L1Q9UHR4 511 aa11.32□□□□□ -0.6
LIMCH1-203ENST00000396595 HARSP12081 509 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 SPATA5Q8NB90 893 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 GPT2Q8TD30 523 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 CABLES1Q8TDN4 633 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 ARHGEF10LQ9HCE6 1279 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 MAST3O60307 1309 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 TRIM68Q6AZZ1 485 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 ZNF654Q8IZM8 581 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 REXO1Q8N1G1 1221 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 CCT6BQ92526 530 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 NLRC4Q9NPP4 1024 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 PKD2L1Q9P0L9 805 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 MROH5Q6ZUA9 1318 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 CTNNA1P35221 906 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 MORC3Q14149 939 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 DCUN1D2Q6PH85 259 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 NELFCDQ8IXH7 590 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 CXorf38Q8TB03 319 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 FAM71BQ8TC56 605 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 VCX3AQ9NNX9 186 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 H7C1D1 291 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 RIMBP2O15034 1052 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 DESI2Q9BSY9 194 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 RIPOR2Q9Y4F9 1068 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 FAM135BQ49AJ0 1406 aa11.31□□□□□ -0.6
LIMCH1-203ENST00000396595 APBA1Q02410 837 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 MYCT1Q8N699 235 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 P3H4Q92791 437 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 RBM17Q96I25 401 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 SLC52A2Q9HAB3 445 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 PALD1Q9ULE6 856 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 TPCN1Q9ULQ1 816 aa11.3□□□□□ -0.6
LIMCH1-203ENST00000396595 ATP8B1O43520 1251 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms