RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 DCAF8Q5TAQ9 597 aa17.15■□□□□ 0.34
CBX3-202ENST00000396386 DHX40Q8IX18 779 aaKnown RBP17.15■□□□□ 0.34
CBX3-202ENST00000396386 BPIFA3Q9BQP9 254 aa17.15■□□□□ 0.34
CBX3-202ENST00000396386 SRPRBQ9Y5M8 271 aaKnown RBP17.15■□□□□ 0.34
CBX3-202ENST00000396386 PLIN4Q96Q06 1357 aa17.14■□□□□ 0.34
CBX3-202ENST00000396386 NLRP5P59047 1200 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 KIAA2012Q0VF49 1180 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 DPCR1Q3MIW9 517 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 STYK1Q6J9G0 422 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 KRBA2Q6ZNG9 492 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 C2CD5Q86YS7 1000 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 CERS5Q8N5B7 392 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 AOPEPQ8N6M6 819 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 SPC24Q8NBT2 197 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 NEDD1Q8NHV4 660 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 ZNF622Q969S3 477 aaKnown RBP eCLIP17.14■□□□□ 0.332e-21■■□□□ 12.9
CBX3-202ENST00000396386 TMEM47Q9BQJ4 181 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 MAD2L2Q9UI95 211 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 STX8Q9UNK0 236 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 TTF2Q9UNY4 1162 aaKnown RBP17.14■□□□□ 0.33
CBX3-202ENST00000396386 SLX4Q8IY92 1834 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 CALML3P27482 149 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 CDC25BP30305 580 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 DOK7Q18PE1 504 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 SH3GLB2Q9NR46 395 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 HOOK1Q9UJC3 728 aaKnown RBP17.14■□□□□ 0.33
CBX3-202ENST00000396386 TUBE1Q9UJT0 475 aa17.14■□□□□ 0.33
CBX3-202ENST00000396386 F8W031 263 aaPredicted RBP17.13■□□□□ 0.33
CBX3-202ENST00000396386 EARS2Q5JPH6 523 aaKnown RBP17.13■□□□□ 0.33
CBX3-202ENST00000396386 ELOA2Q8IYF1 753 aaPredicted RBP17.13■□□□□ 0.33
CBX3-202ENST00000396386 STAG2Q8N3U4 1231 aa17.13■□□□□ 0.33
CBX3-202ENST00000396386 CNNM3Q8NE01 707 aa17.13■□□□□ 0.33
CBX3-202ENST00000396386 PIBF1Q8WXW3 757 aa17.13■□□□□ 0.33
CBX3-202ENST00000396386 LZTS2Q9BRK4 669 aa17.13■□□□□ 0.33
CBX3-202ENST00000396386 BIN1O00499 593 aa17.12■□□□□ 0.33
CBX3-202ENST00000396386 GRIN1Q05586 938 aa17.12■□□□□ 0.33
CBX3-202ENST00000396386 TTC38Q5R3I4 469 aa17.12■□□□□ 0.33
CBX3-202ENST00000396386 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.12■□□□□ 0.33
CBX3-202ENST00000396386 TTC12Q9H892 705 aaPredicted RBP17.12■□□□□ 0.33
CBX3-202ENST00000396386 BAZ2BQ9UIF8 2168 aaKnown RBP17.12■□□□□ 0.33
CBX3-202ENST00000396386 H0YIN7 160 aa17.12■□□□□ 0.33
CBX3-202ENST00000396386 TRAPPC10P48553 1259 aa17.12■□□□□ 0.33
CBX3-202ENST00000396386 PICALMQ13492 652 aa17.12■□□□□ 0.33
CBX3-202ENST00000396386 LONRF3Q496Y0 759 aa17.12■□□□□ 0.33
CBX3-202ENST00000396386 METTL16Q86W50 562 aaKnown RBP17.12■□□□□ 0.33
CBX3-202ENST00000396386 FERMT2Q96AC1 680 aa17.12■□□□□ 0.33
CBX3-202ENST00000396386 C10orf71Q711Q0 1435 aa17.11■□□□□ 0.33
CBX3-202ENST00000396386 GREB1LQ9C091 1923 aaPredicted RBP17.11■□□□□ 0.33
CBX3-202ENST00000396386 PALM3A6NDB9 673 aaPredicted RBP17.11■□□□□ 0.33
CBX3-202ENST00000396386 TOP1P11387 765 aaKnown RBP17.11■□□□□ 0.33
CBX3-202ENST00000396386 PNOCQ13519 176 aa17.11■□□□□ 0.33
CBX3-202ENST00000396386 SPECC1Q5M775 1068 aa17.11■□□□□ 0.33
CBX3-202ENST00000396386 DRC7Q8IY82 874 aa17.11■□□□□ 0.33
CBX3-202ENST00000396386 CCDC148Q8NFR7 591 aa17.11■□□□□ 0.33
CBX3-202ENST00000396386 ZNF830Q96NB3 372 aaPredicted RBP17.11■□□□□ 0.33
CBX3-202ENST00000396386 SCN9AQ15858 1988 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 HHIPL2Q6UWX4 724 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 BLIDQ8IZY5 108 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 FAM177A1Q8N128 213 aaPredicted RBP17.1■□□□□ 0.33
CBX3-202ENST00000396386 GPKOWQ92917 476 aaPredicted RBP eCLIP17.1■□□□□ 0.338e-6■■□□□ 13.6
CBX3-202ENST00000396386 TEKT1Q969V4 418 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 MRFAP1L1Q96HT8 127 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 MXD3Q9BW11 206 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 CSRNP2Q9H175 543 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 MTMR7Q9Y216 660 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 OFD1O75665 1012 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 TPM4P67936 248 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 NOM1Q5C9Z4 860 aaKnown RBP17.1■□□□□ 0.33
CBX3-202ENST00000396386 PIK3AP1Q6ZUJ8 805 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 PODNQ7Z5L7 613 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 CEP95Q96GE4 821 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 SPZ1Q9BXG8 430 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 ANO8Q9HCE9 1232 aaPredicted RBP17.1■□□□□ 0.33
CBX3-202ENST00000396386 USP40Q9NVE5 1235 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 CLIP2Q9UDT6 1046 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 PCDHA4Q9UN74 947 aa17.1■□□□□ 0.33
CBX3-202ENST00000396386 MYO3BQ8WXR4 1341 aa17.09■□□□□ 0.33
CBX3-202ENST00000396386 SMTNL1A8MU46 457 aa17.09■□□□□ 0.33
CBX3-202ENST00000396386 POLR2DO15514 142 aaKnown RBP17.09■□□□□ 0.33
CBX3-202ENST00000396386 PARP1P09874 1014 aaKnown RBP17.09■□□□□ 0.33
CBX3-202ENST00000396386 NOVP48745 357 aa17.09■□□□□ 0.33
CBX3-202ENST00000396386 SCNN1DP51172 638 aa17.09■□□□□ 0.33
CBX3-202ENST00000396386 ATP2C1P98194 919 aaPredicted RBP17.09■□□□□ 0.33
CBX3-202ENST00000396386 GABPAQ06546 454 aa17.09■□□□□ 0.33
CBX3-202ENST00000396386 DBNDD1Q9H9R9 158 aa17.09■□□□□ 0.33
CBX3-202ENST00000396386 STK32BQ9NY57 414 aa17.09■□□□□ 0.33
CBX3-202ENST00000396386 SIPA1L1O43166 1804 aa17.09■□□□□ 0.33
CBX3-202ENST00000396386 PSME4Q14997 1843 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 WNT7AO00755 349 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 VEGFAP15692 232 aaPredicted RBP17.08■□□□□ 0.33
CBX3-202ENST00000396386 FKBP1AP62942 108 aaKnown RBP17.08■□□□□ 0.33
CBX3-202ENST00000396386 POSTNQ15063 836 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 ZNF174Q15697 407 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 SLC15A2Q16348 729 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 SLC35G1Q2M3R5 365 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 WWC2Q6AWC2 1192 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 GALNT17Q6IS24 598 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 KANK3Q6NY19 840 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 DAGLBQ8NCG7 672 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 KCNF1Q9H3M0 494 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms