RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MLKLQ8NB16 471 aa10.98□□□□□ -0.65
COL6A3-204ENST00000392003 PDS5AQ29RF7 1337 aaKnown RBP10.98□□□□□ -0.65
COL6A3-204ENST00000392003 KLRK1P26718 216 aa10.98□□□□□ -0.65
COL6A3-204ENST00000392003 KIF5BP33176 963 aa10.98□□□□□ -0.65
COL6A3-204ENST00000392003 CALR3Q96L12 384 aaKnown RBP10.98□□□□□ -0.65
COL6A3-204ENST00000392003 BCORQ6W2J9 1755 aa10.98□□□□□ -0.65
COL6A3-204ENST00000392003 APBA3O96018 575 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 TOP1P11387 765 aaKnown RBP10.97□□□□□ -0.65
COL6A3-204ENST00000392003 USP5P45974 858 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 GRAPQ13588 217 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 SLC4A8Q2Y0W8 1093 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 ZNF804AQ7Z570 1209 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 CCAR2Q8N163 923 aaKnown RBP10.97□□□□□ -0.65
COL6A3-204ENST00000392003 KIF18AQ8NI77 898 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 GRAPLQ8TC17 118 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-204ENST00000392003 RBM17Q96I25 401 aaKnown RBP10.97□□□□□ -0.65
COL6A3-204ENST00000392003 CICQ96RK0 1608 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-204ENST00000392003 hCG_1642624A0A1W2PR95 340 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 ORC4O43929 436 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 UFL1O94874 794 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 PLEKHA8P1O95397 391 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 NLRP5P59047 1200 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 SLC27A3Q5K4L6 730 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 TRIML1Q8N9V2 468 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 DCP1AQ9NPI6 582 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-204ENST00000392003 LDHBP07195 334 aaKnown RBP10.97□□□□□ -0.65
COL6A3-204ENST00000392003 ATP1A3P13637 1013 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 TMTC3Q6ZXV5 915 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 FERMT2Q96AC1 680 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 MYCBPQ99417 103 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-204ENST00000392003 PHF20Q9BVI0 1012 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 CSRNP2Q9H175 543 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 MCM9Q9NXL9 1143 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 MAN1B1Q9UKM7 699 aa10.97□□□□□ -0.65
COL6A3-204ENST00000392003 COL1A1P02452 1464 aaPredicted RBP10.96□□□□□ -0.65
COL6A3-204ENST00000392003 TXNRD1Q16881 649 aa10.96□□□□□ -0.65
COL6A3-204ENST00000392003 FAM47AQ5JRC9 791 aa10.96□□□□□ -0.65
COL6A3-204ENST00000392003 PRR5LQ6MZQ0 368 aa10.96□□□□□ -0.65
COL6A3-204ENST00000392003 KAT14Q9H8E8 782 aa10.96□□□□□ -0.65
COL6A3-204ENST00000392003 FANCLQ9NW38 375 aa10.96□□□□□ -0.65
COL6A3-204ENST00000392003 FGRP09769 529 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 PRDX5P30044 214 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 NOP2P46087 812 aaKnown RBP10.96□□□□□ -0.66
COL6A3-204ENST00000392003 GSTO1P78417 241 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 SATB1Q01826 763 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 TROAPQ12815 778 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 NBPF20Q3BBV1 942 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 PDCL2Q8N4E4 241 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 WDR66Q8TBY9 1149 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 DHX58Q96C10 678 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 GPR101Q96P66 508 aaPredicted RBP10.96□□□□□ -0.66
COL6A3-204ENST00000392003 LEMD3Q9Y2U8 911 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 ECM29Q5VYK3 1845 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 SMIM22K7EJ46 135 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 FOXN1O15353 648 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 LDHCP07864 332 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 CCDC172P0C7W6 258 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 MAP2K1Q02750 393 aaPredicted RBP10.96□□□□□ -0.66
COL6A3-204ENST00000392003 GRIN1Q05586 938 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 SBK1Q52WX2 424 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 TTC38Q5R3I4 469 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 HOMER1Q86YM7 354 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 PSMD1Q99460 953 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 GGA1Q9UJY5 639 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 XDHP47989 1333 aa10.96□□□□□ -0.66
COL6A3-204ENST00000392003 PSDA5PKW4 1024 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-204ENST00000392003 USP27XA6NNY8 438 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 ONECUT3O60422 494 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-204ENST00000392003 BAG3O95817 575 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 PKN1Q16512 942 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 CCDC178Q5BJE1 867 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 FOXP4Q8IVH2 680 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-204ENST00000392003 MKNK2Q9HBH9 465 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.95□□□□□ -0.66
COL6A3-204ENST00000392003 TUBB4AP04350 444 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 SCG2P13521 617 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 CALML3P27482 149 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 NT5C2P49902 561 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF174Q15697 407 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 ARMCX5Q6P1M9 558 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 COL5A3P25940 1745 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-204ENST00000392003 MYH2Q9UKX2 1941 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 DUOX1Q9NRD9 1551 aa10.95□□□□□ -0.66
COL6A3-204ENST00000392003 GYS1P13807 737 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 KCNJ6P48051 423 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF513Q8N8E2 541 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF384Q8TF68 577 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 PYM1Q9BRP8 204 aaKnown RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 NFE2L3Q9Y4A8 694 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 CTIFO43310 598 aaKnown RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 AFMP43652 599 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 GNAQP50148 359 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 MDM2Q00987 491 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 FUT2Q10981 343 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 SYCP1Q15431 976 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 NYAP1Q6ZVC0 841 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 TXNRD3Q86VQ6 643 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 ENOX1Q8TC92 643 aaKnown RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 NCAPGQ9BPX3 1015 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 KCND1Q9NSA2 647 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms