RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 FERMT2Q96AC1 680 aa15.92■□□□□ 0.14
RTF1-201ENST00000389629 MORC3Q14149 939 aa15.92■□□□□ 0.14
RTF1-201ENST00000389629 CCDC152Q4G0S7 254 aa15.92■□□□□ 0.14
RTF1-201ENST00000389629 MMS22LQ6ZRQ5 1243 aa15.92■□□□□ 0.14
RTF1-201ENST00000389629 HAUS4Q9H6D7 363 aa15.92■□□□□ 0.14
RTF1-201ENST00000389629 MCTP2Q6DN12 878 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 IFIH1Q9BYX4 1025 aaKnown RBP15.91■□□□□ 0.14
RTF1-201ENST00000389629 FAM207AQ9NSI2 230 aaPredicted RBP15.91■□□□□ 0.14
RTF1-201ENST00000389629 SAMD15Q9P1V8 674 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 FHOD1Q9Y613 1164 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 KIF4AO95239 1232 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 PUM3Q15397 648 aaKnown RBP15.91■□□□□ 0.14
RTF1-201ENST00000389629 ZNF526Q8TF50 670 aaPredicted RBP15.91■□□□□ 0.14
RTF1-201ENST00000389629 RPGRIP1Q96KN7 1286 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 GPR108Q9NPR9 543 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 SETD1BQ9UPS6 1966 aaKnown RBP15.91■□□□□ 0.14
RTF1-201ENST00000389629 MAP2P11137 1827 aaKnown RBP15.91■□□□□ 0.14
RTF1-201ENST00000389629 A6NNZ2 444 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 KRT13P13646 458 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 PDE4DQ08499 809 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 MTF1Q14872 753 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 E2F5Q15329 346 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 TUBB8Q3ZCM7 444 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 SYMPKQ92797 1274 aaKnown RBP15.91■□□□□ 0.14
RTF1-201ENST00000389629 KIF28PB7ZC32 967 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 FANCBQ8NB91 859 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.91■□□□□ 0.14
RTF1-201ENST00000389629 NRKQ7Z2Y5 1582 aa15.91■□□□□ 0.14
RTF1-201ENST00000389629 ERCC5P28715 1186 aaPredicted RBP15.9■□□□□ 0.14
RTF1-201ENST00000389629 SPATA5Q8NB90 893 aa15.9■□□□□ 0.14
RTF1-201ENST00000389629 NSRP1Q9H0G5 558 aaKnown RBP15.9■□□□□ 0.14
RTF1-201ENST00000389629 RPSAP08865 295 aaKnown RBP15.9■□□□□ 0.14
RTF1-201ENST00000389629 PAK2Q13177 524 aa15.9■□□□□ 0.14
RTF1-201ENST00000389629 RPAINQ86UA6 219 aa15.9■□□□□ 0.14
RTF1-201ENST00000389629 C2CD5Q86YS7 1000 aa15.9■□□□□ 0.14
RTF1-201ENST00000389629 RBM28Q9NW13 759 aaKnown RBP15.9■□□□□ 0.14
RTF1-201ENST00000389629 GSPT2Q8IYD1 628 aaKnown RBP15.9■□□□□ 0.14
RTF1-201ENST00000389629 MED23Q9ULK4 1368 aa15.9■□□□□ 0.14
RTF1-201ENST00000389629 SARNPP82979 210 aaKnown RBP15.9■□□□□ 0.14
RTF1-201ENST00000389629 PTPROQ16827 1216 aa15.9■□□□□ 0.14
RTF1-201ENST00000389629 DZIP3Q86Y13 1208 aaKnown RBP15.9■□□□□ 0.14
RTF1-201ENST00000389629 TAOK3Q9H2K8 898 aa15.9■□□□□ 0.14
RTF1-201ENST00000389629 MRFAP1Q9Y605 127 aa15.9■□□□□ 0.14
RTF1-201ENST00000389629 GOLGA8KD6RF30 607 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 FOXN1O15353 648 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 NAPAP54920 295 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 IFI16Q16666 785 aaKnown RBP15.89■□□□□ 0.13
RTF1-201ENST00000389629 USPL1Q5W0Q7 1092 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 CCDC25Q86WR0 208 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 LRRN4CLQ8ND94 238 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 PCDHB6Q9Y5E3 794 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 FAM170AA1A519 330 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 RBM43Q6ZSC3 357 aaKnown RBP15.89■□□□□ 0.13
RTF1-201ENST00000389629 ARHGEF25Q86VW2 580 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 TACO1Q9BSH4 297 aaKnown RBP15.89■□□□□ 0.13
RTF1-201ENST00000389629 ZNF609O15014 1411 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 PEX19P40855 299 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 TCIRG1Q13488 830 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 RAPGEF1Q13905 1077 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 RESP18Q5W5W9 173 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 NOX5Q96PH1 765 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 ZNF287Q9HBT7 754 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 SH2B2O14492 632 aaPredicted RBP15.89■□□□□ 0.13
RTF1-201ENST00000389629 CTDNEP1O95476 244 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 C2orf54Q08AI8 447 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 FAM169AQ9Y6X4 670 aa15.89■□□□□ 0.13
RTF1-201ENST00000389629 SRGAP2O75044 1071 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 COPB1P53618 953 aaKnown RBP15.88■□□□□ 0.13
RTF1-201ENST00000389629 EXOSC10Q01780 885 aaKnown RBP15.88■□□□□ 0.13
RTF1-201ENST00000389629 ENGASEQ8NFI3 743 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 DDX17Q92841 729 aaKnown RBP15.88■□□□□ 0.13
RTF1-201ENST00000389629 FBXO3Q9UK99 471 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 PPP1R12BO60237 982 aaPredicted RBP15.88■□□□□ 0.13
RTF1-201ENST00000389629 TSPY3P0CV98 308 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 TSPY8P0CW00 308 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 CCDC6Q16204 474 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 CFAP221Q4G0U5 840 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 MICAL1Q8TDZ2 1067 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 LPIN2Q92539 896 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 KCNB2Q92953 911 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 TBC1D31Q96DN5 1066 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 SUGCTQ9HAC7 445 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 ABCA9Q8IUA7 1624 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 USP31Q70CQ4 1352 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 PLEKHG1Q9ULL1 1385 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 A0A0G2JLW4 131 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 CLGNO14967 610 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 CXCR5P32302 372 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 SHC4Q6S5L8 630 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 BUB1O43683 1085 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 H2AFXP16104 143 aaPredicted RBP15.88■□□□□ 0.13
RTF1-201ENST00000389629 CASP1P29466 404 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 PHKA1P46020 1223 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 LETM2Q2VYF4 491 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 JAG2Q9Y219 1238 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 ZNF652Q9Y2D9 606 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 VWDEQ8N2E2 1590 aa15.88■□□□□ 0.13
RTF1-201ENST00000389629 VSNL1P62760 191 aa15.87■□□□□ 0.13
RTF1-201ENST00000389629 DNAJC10Q8IXB1 793 aa15.87■□□□□ 0.13
RTF1-201ENST00000389629 RIPOR2Q9Y4F9 1068 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms