RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 NR1I2O75469 434 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 VIMP08670 466 aaKnown RBP13.04□□□□□ -0.32
NPHP4-202ENST00000378161 MYBL1P10243 752 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 MYBPC2Q14324 1141 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 COG1Q8WTW3 980 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 SNRNP27Q8WVK2 155 aaKnown RBP13.04□□□□□ -0.32
NPHP4-202ENST00000378161 MIS12Q9H081 205 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 SUGCTQ9HAC7 445 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 FOXO3O43524 673 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 ANXA1P04083 346 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 SKIP12755 728 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 NNTQ13423 1086 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 CCDC93Q567U6 631 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 WLSQ5T9L3 541 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 USP33Q8TEY7 942 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 ZNF473Q8WTR7 871 aaKnown RBP13.04□□□□□ -0.32
NPHP4-202ENST00000378161 ATP6V0A1Q93050 837 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 IQSEC3Q9UPP2 1182 aaPredicted RBP13.04□□□□□ -0.32
NPHP4-202ENST00000378161 IFIT1P09914 478 aaKnown RBP13.04□□□□□ -0.32
NPHP4-202ENST00000378161 CD151P48509 253 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 RUFY4Q6ZNE9 571 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 MRPS27Q92552 414 aaKnown RBP13.04□□□□□ -0.32
NPHP4-202ENST00000378161 STAMBPL1Q96FJ0 436 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 RAB3IPQ96QF0 476 aaPredicted RBP13.04□□□□□ -0.32
NPHP4-202ENST00000378161 CNNM1Q9NRU3 951 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 GALNT8Q9NY28 637 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 LMCD1Q9NZU5 365 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 CLASP1Q7Z460 1538 aa13.04□□□□□ -0.32
NPHP4-202ENST00000378161 CDC42BPAQ5VT25 1732 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 UHRF1BP1LA0JNW5 1464 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 CFAP73A6NFT4 308 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 STX10O60499 249 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 YEATS4O95619 227 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 GUCY1B3Q02153 619 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 KIF6Q6ZMV9 814 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 PHC3Q8NDX5 983 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 KLHL29Q96CT2 875 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 DRC3Q9H069 523 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 CTTNBP2NLQ9P2B4 639 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 AKR1B15C9JRZ8 316 aaPredicted RBP13.03□□□□□ -0.32
NPHP4-202ENST00000378161 MYL5Q02045 173 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 C11orf57Q6ZUT1 292 aaPredicted RBP13.03□□□□□ -0.32
NPHP4-202ENST00000378161 NACAP1Q9BZK3 213 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 EPN3Q9H201 632 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 IQGAP3Q86VI3 1631 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 NR1D1P20393 614 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 ATP4AP20648 1035 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 TCEANC2Q96MN5 208 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 CENPKQ9BS16 269 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 INTUQ9ULD6 942 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 RTL1A6NKG5 1358 aa13.03□□□□□ -0.32
NPHP4-202ENST00000378161 GCOM1H8Y6P7 765 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-202ENST00000378161 GIGYF1O75420 1035 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-202ENST00000378161 MYZAPP0CAP1 466 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 MTX1Q13505 466 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 TMEM154Q6P9G4 183 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 MAB21L3Q8N8X9 362 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 WASF1Q92558 559 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 BRF1Q92994 677 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 NUP88Q99567 741 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-202ENST00000378161 CDHR2Q9BYE9 1310 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 ATP2A2P16615 1042 aaKnown RBP13.02□□□□□ -0.32
NPHP4-202ENST00000378161 FUKQ8N0W3 1084 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 KCNV2Q8TDN2 545 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 IFT81Q8WYA0 676 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 RIN2Q8WYP3 895 aaPredicted RBP13.02□□□□□ -0.32
NPHP4-202ENST00000378161 WDR37Q9Y2I8 494 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 C2CD2Q9Y426 696 aa13.02□□□□□ -0.32
NPHP4-202ENST00000378161 CCND1P24385 295 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 PPARDQ03181 441 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 ALS2CLQ60I27 953 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 ARHGEF1Q92888 912 aaKnown RBP13.02□□□□□ -0.33
NPHP4-202ENST00000378161 CCT8L2Q96SF2 557 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 EYA1Q99502 592 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 ZCWPW1Q9H0M4 648 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 BABAM1Q9NWV8 329 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 CHMP2BQ9UQN3 213 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 GRM8O00222 908 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.02□□□□□ -0.33
NPHP4-202ENST00000378161 KSR2Q6VAB6 950 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 RUFY3Q7L099 469 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 OR8K1Q8NGG5 319 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 CLIC6Q96NY7 704 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 SELENOSQ9BQE4 189 aa13.02□□□□□ -0.33
NPHP4-202ENST00000378161 M0R2C6 588 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 NEK2P51955 445 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 CREB3L3Q68CJ9 461 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 MIS18BP1Q6P0N0 1132 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 PHLDB2Q86SQ0 1253 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 CCDC110Q8TBZ0 833 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 MAGEC3Q8TD91 643 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 MTMR6Q9Y217 621 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 ITM2BQ9Y287 266 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 A0A087WZG4 1122 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 RAD21O60216 631 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 TMED10P49755 219 aaKnown RBP13.01□□□□□ -0.33
NPHP4-202ENST00000378161 TBC1D25Q3MII6 688 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 HSP90AA4PQ58FG1 418 aa13.01□□□□□ -0.33
NPHP4-202ENST00000378161 PDCD7Q8N8D1 485 aaKnown RBP13.01□□□□□ -0.33
NPHP4-202ENST00000378161 CLMNQ96JQ2 1002 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms