RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 C16orf86Q6ZW13 317 aa14.54□□□□□ -0.08
VRK3-202ENST00000377011 CTU1Q7Z7A3 348 aaKnown RBP14.54□□□□□ -0.08
VRK3-202ENST00000377011 DOCK3Q8IZD9 2030 aa14.53□□□□□ -0.08
VRK3-202ENST00000377011 PATL2C9JE40 543 aaKnown RBP14.53□□□□□ -0.08
VRK3-202ENST00000377011 MPHOSPH10O00566 681 aaKnown RBP14.53□□□□□ -0.08
VRK3-202ENST00000377011 PRPF40AO75400 957 aaKnown RBP14.53□□□□□ -0.08
VRK3-202ENST00000377011 OTOP1Q7RTM1 612 aa14.53□□□□□ -0.08
VRK3-202ENST00000377011 RUFY2Q8WXA3 655 aa14.53□□□□□ -0.08
VRK3-202ENST00000377011 SYAP1Q96A49 352 aaPredicted RBP14.53□□□□□ -0.08
VRK3-202ENST00000377011 AGTPBP1Q9UPW5 1226 aa14.53□□□□□ -0.08
VRK3-202ENST00000377011 GREB1LQ9C091 1923 aaPredicted RBP14.53□□□□□ -0.08
VRK3-202ENST00000377011 APPP05067 770 aa14.52□□□□□ -0.08
VRK3-202ENST00000377011 BCRP11274 1271 aa14.52□□□□□ -0.08
VRK3-202ENST00000377011 PRKCSHP14314 528 aaPredicted RBP14.52□□□□□ -0.08
VRK3-202ENST00000377011 SBK1Q52WX2 424 aa14.52□□□□□ -0.08
VRK3-202ENST00000377011 GPT2Q8TD30 523 aa14.52□□□□□ -0.08
VRK3-202ENST00000377011 TRIM17Q9Y577 477 aa14.52□□□□□ -0.08
VRK3-202ENST00000377011 USP17L10C9JJH3 530 aa14.52□□□□□ -0.09
VRK3-202ENST00000377011 RASA1P20936 1047 aa14.52□□□□□ -0.09
VRK3-202ENST00000377011 TDO2P48775 406 aa14.52□□□□□ -0.09
VRK3-202ENST00000377011 LRSAM1Q6UWE0 723 aa14.52□□□□□ -0.09
VRK3-202ENST00000377011 FASTKD5Q7L8L6 764 aaKnown RBP14.52□□□□□ -0.09
VRK3-202ENST00000377011 UBE2Q2Q8WVN8 375 aa14.52□□□□□ -0.09
VRK3-202ENST00000377011 NAP1L5Q96NT1 182 aaPredicted RBP14.52□□□□□ -0.09
VRK3-202ENST00000377011 ASCC2Q9H1I8 757 aaPredicted RBP14.52□□□□□ -0.09
VRK3-202ENST00000377011 ZCCHC17Q9NP64 241 aaKnown RBP14.52□□□□□ -0.09
VRK3-202ENST00000377011 TNRC18O15417 2968 aaPredicted RBP14.51□□□□□ -0.09
VRK3-202ENST00000377011 LACTBP83111 547 aaPredicted RBP14.51□□□□□ -0.09
VRK3-202ENST00000377011 CTDSPL2Q05D32 466 aa14.51□□□□□ -0.09
VRK3-202ENST00000377011 TMEM87AQ8NBN3 555 aa14.51□□□□□ -0.09
VRK3-202ENST00000377011 PROCA1Q8NCQ7 364 aaPredicted RBP14.51□□□□□ -0.09
VRK3-202ENST00000377011 PDLIM2Q96JY6 352 aa14.51□□□□□ -0.09
VRK3-202ENST00000377011 LSG1Q9H089 658 aaKnown RBP14.51□□□□□ -0.09
VRK3-202ENST00000377011 AS3MTQ9HBK9 375 aa14.51□□□□□ -0.09
VRK3-202ENST00000377011 ARPP21Q9UBL0 812 aaPredicted RBP14.51□□□□□ -0.09
VRK3-202ENST00000377011 ROBO3Q96MS0 1386 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 NCLP19338 710 aaKnown RBP14.5□□□□□ -0.09
VRK3-202ENST00000377011 CWC27Q6UX04 472 aaKnown RBP14.5□□□□□ -0.09
VRK3-202ENST00000377011 KIAA1211Q6ZU35 1233 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 ZSCAN30Q86W11 494 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 ANKRD13CQ8N6S4 541 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 TRIM47Q96LD4 638 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 P2RX7Q99572 595 aaKnown RBP14.5□□□□□ -0.09
VRK3-202ENST00000377011 TXNRD2Q9NNW7 524 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 HPS5Q9UPZ3 1129 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 RLFQ13129 1914 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 MGAMO43451 1857 aa14.5□□□□□ -0.09
VRK3-202ENST00000377011 HIP1O00291 1037 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 PDIA4P13667 645 aaKnown RBP14.49□□□□□ -0.09
VRK3-202ENST00000377011 MCMDC2Q4G0Z9 681 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 GIMAP6Q6P9H5 292 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 KCNB2Q92953 911 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 TTC14Q96N46 770 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 PARK7Q99497 189 aaKnown RBP14.49□□□□□ -0.09
VRK3-202ENST00000377011 NBPF3Q9H094 633 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 HELLSQ9NRZ9 838 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 SWAP70Q9UH65 585 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 HSPD1P10809 573 aaKnown RBP14.49□□□□□ -0.09
VRK3-202ENST00000377011 GNAT2P19087 354 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 VCAM1P19320 739 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 PPARAQ07869 468 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 FAM47AQ5JRC9 791 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 TM6SF1Q9BZW5 370 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 EFCC1Q9HA90 598 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 CABP5Q9NP86 173 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.49□□□□□ -0.09
VRK3-202ENST00000377011 SNX14Q9Y5W7 946 aa14.49□□□□□ -0.09
VRK3-202ENST00000377011 CCDC85CA6NKD9 419 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 FGAP02671 866 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 TPM2P07951 284 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 EEF2P13639 858 aaKnown RBP14.48□□□□□ -0.09
VRK3-202ENST00000377011 SPICE1Q8N0Z3 855 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 ERO1AQ96HE7 468 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 FEZ1Q99689 392 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 KIAA1683Q9H0B3 1180 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 NAPBQ9H115 298 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 GINM1Q9NU53 330 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 PTPN22Q9Y2R2 807 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 SLC45A1Q9Y2W3 748 aa14.48□□□□□ -0.09
VRK3-202ENST00000377011 CCDC171Q6TFL3 1326 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 C19orf81C9J6K1 198 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 PSMC4P43686 418 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 TERF1P54274 439 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 Q3C1V9 767 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 USP17L2Q6R6M4 530 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 TMEM179Q6ZVK1 233 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 C12orf42Q96LP6 360 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 DIAPH3Q9NSV4 1193 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 TMOD4Q9NZQ9 345 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 TMEM63CQ9P1W3 806 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 GABRQQ9UN88 632 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 LIMCH1Q9UPQ0 1083 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 PTCH2Q9Y6C5 1203 aa14.47□□□□□ -0.09
VRK3-202ENST00000377011 IGKV6D-41A0A0C4DH26 115 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 RRP9O43818 475 aaKnown RBP14.46□□□□□ -0.09
VRK3-202ENST00000377011 NMT2O60551 498 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 CNMDO75829 334 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 HOXA7P31268 230 aaPredicted RBP14.46□□□□□ -0.09
VRK3-202ENST00000377011 MCM5P33992 734 aa14.46□□□□□ -0.09
VRK3-202ENST00000377011 HAND2P61296 217 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms