RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 COL5A3P25940 1745 aaPredicted RBP28.77■■■□□ 2.2
C9orf40-201ENST00000376854 TEX33O43247 280 aa28.76■■■□□ 2.2
C9orf40-201ENST00000376854 TTC38Q5R3I4 469 aa28.76■■■□□ 2.2
C9orf40-201ENST00000376854 ZNF384Q8TF68 577 aa28.76■■■□□ 2.2
C9orf40-201ENST00000376854 DESI2Q9BSY9 194 aa28.76■■■□□ 2.2
C9orf40-201ENST00000376854 BSDC1Q9NW68 430 aaPredicted RBP28.76■■■□□ 2.2
C9orf40-201ENST00000376854 NPY5RQ15761 445 aa28.76■■■□□ 2.19
C9orf40-201ENST00000376854 PANX2Q96RD6 677 aa28.76■■■□□ 2.19
C9orf40-201ENST00000376854 CACNA1SQ13698 1873 aa28.75■■■□□ 2.19
C9orf40-201ENST00000376854 CELF1Q92879 486 aaKnown RBP28.75■■■□□ 2.19
C9orf40-201ENST00000376854 FHOD1Q9Y613 1164 aa28.75■■■□□ 2.19
C9orf40-201ENST00000376854 USP17L12C9JPN9 530 aa28.75■■■□□ 2.19
C9orf40-201ENST00000376854 USP17L21D6R901 530 aa28.75■■■□□ 2.19
C9orf40-201ENST00000376854 MAP3K9P80192 1104 aa28.75■■■□□ 2.19
C9orf40-201ENST00000376854 CLEC4GQ6UXB4 293 aa28.75■■■□□ 2.19
C9orf40-201ENST00000376854 SMYD4Q8IYR2 804 aaPredicted RBP28.75■■■□□ 2.19
C9orf40-201ENST00000376854 FAM84BQ96KN1 310 aaPredicted RBP28.75■■■□□ 2.19
C9orf40-201ENST00000376854 TPM1P09493 284 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 PTGDRQ13258 359 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 SF3B3Q15393 1217 aaKnown RBP28.74■■■□□ 2.19
C9orf40-201ENST00000376854 TERF2Q15554 542 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 MINPP1Q9UNW1 487 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 CNTNAP5Q8WYK1 1306 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 MTF1Q14872 753 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 CDKAL1Q5VV42 579 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 TBC1D9BQ66K14 1250 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 PPFIBP1Q86W92 1011 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 IGSF22Q8N9C0 903 aa28.74■■■□□ 2.19
C9orf40-201ENST00000376854 MYH2Q9UKX2 1941 aa28.73■■■□□ 2.19
C9orf40-201ENST00000376854 PPP1R3GB7ZBB8 358 aa28.73■■■□□ 2.19
C9orf40-201ENST00000376854 ATP2C1P98194 919 aaPredicted RBP28.73■■■□□ 2.19
C9orf40-201ENST00000376854 SRBD1Q8N5C6 995 aaKnown RBP28.73■■■□□ 2.19
C9orf40-201ENST00000376854 KIFC2Q96AC6 838 aa28.73■■■□□ 2.19
C9orf40-201ENST00000376854 ADD3Q9UEY8 706 aaKnown RBP28.73■■■□□ 2.19
C9orf40-201ENST00000376854 KLRK1P26718 216 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 RBL2Q08999 1139 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 TMCO3Q6UWJ1 677 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 CTCFLQ8NI51 663 aaPredicted RBP28.72■■■□□ 2.19
C9orf40-201ENST00000376854 CTAGE1Q96RT6 745 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 MRFAP1Q9Y605 127 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 SOWAHDA6NJG2 315 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 CCDC175P0C221 793 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 PIP4K2BP78356 416 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 KARSQ15046 597 aaKnown RBP28.72■■■□□ 2.19
C9orf40-201ENST00000376854 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28.72■■■□□ 2.19
C9orf40-201ENST00000376854 A0A1B0GUL6 1792 aa28.72■■■□□ 2.19
C9orf40-201ENST00000376854 PNMA6AP0CW24 399 aaPredicted RBP28.71■■■□□ 2.19
C9orf40-201ENST00000376854 MRPL44Q9H9J2 332 aaKnown RBP28.71■■■□□ 2.19
C9orf40-201ENST00000376854 BAZ2AQ9UIF9 1905 aaKnown RBP28.71■■■□□ 2.19
C9orf40-201ENST00000376854 NMT2O60551 498 aa28.71■■■□□ 2.19
C9orf40-201ENST00000376854 PBX1P40424 430 aa28.71■■■□□ 2.19
C9orf40-201ENST00000376854 EVX2Q03828 476 aa28.71■■■□□ 2.19
C9orf40-201ENST00000376854 CCDC24Q8N4L8 307 aa28.71■■■□□ 2.19
C9orf40-201ENST00000376854 STAMQ92783 540 aa28.71■■■□□ 2.19
C9orf40-201ENST00000376854 ST7Q9NRC1 585 aa28.71■■■□□ 2.19
C9orf40-201ENST00000376854 SEMA3EO15041 775 aa28.7■■■□□ 2.19
C9orf40-201ENST00000376854 ZRANB2O95218 330 aaKnown RBP eCLIP28.7■■■□□ 2.19
C9orf40-201ENST00000376854 PPP2R3AQ06190 1150 aa28.7■■■□□ 2.19
C9orf40-201ENST00000376854 FILIP1LQ4L180 1135 aa28.7■■■□□ 2.19
C9orf40-201ENST00000376854 CPLX3Q8WVH0 158 aa28.7■■■□□ 2.19
C9orf40-201ENST00000376854 NSUN4Q96CB9 384 aaKnown RBP28.7■■■□□ 2.19
C9orf40-201ENST00000376854 NAA15Q9BXJ9 866 aaKnown RBP28.7■■■□□ 2.19
C9orf40-201ENST00000376854 LTBP4Q8N2S1 1624 aa28.7■■■□□ 2.18
C9orf40-201ENST00000376854 ORC4O43929 436 aa28.7■■■□□ 2.18
C9orf40-201ENST00000376854 GTF2E1P29083 439 aaPredicted RBP28.7■■■□□ 2.18
C9orf40-201ENST00000376854 SRP68Q9UHB9 627 aaKnown RBP28.7■■■□□ 2.18
C9orf40-201ENST00000376854 NLRP5P59047 1200 aa28.69■■■□□ 2.18
C9orf40-201ENST00000376854 FAM47AQ5JRC9 791 aa28.69■■■□□ 2.18
C9orf40-201ENST00000376854 PIK3AP1Q6ZUJ8 805 aa28.69■■■□□ 2.18
C9orf40-201ENST00000376854 IQUBQ8NA54 791 aa28.69■■■□□ 2.18
C9orf40-201ENST00000376854 CTNND2Q9UQB3 1225 aa28.69■■■□□ 2.18
C9orf40-201ENST00000376854 SCG2P13521 617 aa28.69■■■□□ 2.18
C9orf40-201ENST00000376854 MECOMQ03112 1051 aa28.69■■■□□ 2.18
C9orf40-201ENST00000376854 XDHP47989 1333 aa28.69■■■□□ 2.18
C9orf40-201ENST00000376854 CASZ1Q86V15 1759 aa28.68■■■□□ 2.18
C9orf40-201ENST00000376854 E2F4Q16254 413 aa28.68■■■□□ 2.18
C9orf40-201ENST00000376854 RAD9BQ6WBX8 426 aa28.68■■■□□ 2.18
C9orf40-201ENST00000376854 FBXO33Q7Z6M2 555 aa28.68■■■□□ 2.18
C9orf40-201ENST00000376854 BLZF1Q9H2G9 400 aa28.68■■■□□ 2.18
C9orf40-201ENST00000376854 DCP1AQ9NPI6 582 aaPredicted RBP28.68■■■□□ 2.18
C9orf40-201ENST00000376854 CCDC12Q8WUD4 166 aaPredicted RBP28.68■■■□□ 2.18
C9orf40-201ENST00000376854 CRNKL1Q9BZJ0 848 aaKnown RBP28.68■■■□□ 2.18
C9orf40-201ENST00000376854 ADGRG1Q9Y653 693 aa28.68■■■□□ 2.18
C9orf40-201ENST00000376854 TRAPPC10P48553 1259 aa28.67■■■□□ 2.18
C9orf40-201ENST00000376854 EPC1Q9H2F5 836 aa28.67■■■□□ 2.18
C9orf40-201ENST00000376854 MFAP3LO75121 409 aa28.66■■■□□ 2.18
C9orf40-201ENST00000376854 MCM7P33993 719 aa28.66■■■□□ 2.18
C9orf40-201ENST00000376854 GPR161Q8N6U8 529 aaKnown RBP28.66■■■□□ 2.18
C9orf40-201ENST00000376854 LZTFL1Q9NQ48 299 aa28.66■■■□□ 2.18
C9orf40-201ENST00000376854 PFKFB3Q16875 520 aaPredicted RBP28.65■■■□□ 2.18
C9orf40-201ENST00000376854 TEX35Q5T0J7 233 aa28.65■■■□□ 2.18
C9orf40-201ENST00000376854 PYM1Q9BRP8 204 aaKnown RBP28.65■■■□□ 2.18
C9orf40-201ENST00000376854 IRX2Q9BZI1 471 aaPredicted RBP28.65■■■□□ 2.18
C9orf40-201ENST00000376854 DLEC1Q9Y238 1755 aa28.65■■■□□ 2.18
C9orf40-201ENST00000376854 COBLO75128 1261 aa28.65■■■□□ 2.18
C9orf40-201ENST00000376854 CASP14P31944 242 aa28.65■■■□□ 2.18
C9orf40-201ENST00000376854 IL17AQ16552 155 aa28.65■■■□□ 2.18
C9orf40-201ENST00000376854 RRAGBQ5VZM2 374 aa28.65■■■□□ 2.18
C9orf40-201ENST00000376854 PDXDC2PQ6P474 469 aa28.65■■■□□ 2.18
C9orf40-201ENST00000376854 RSRC2Q7L4I2 434 aaKnown RBP28.65■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms