RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 USP6NLQ92738 828 aa26■■□□□ 1.75
CCDC28B-201ENST00000373602 SH2D4AQ9H788 454 aa26■■□□□ 1.75
CCDC28B-201ENST00000373602 EPB41L4AQ9HCS5 686 aaPredicted RBP26■■□□□ 1.75
CCDC28B-201ENST00000373602 CAPN2P17655 700 aa25.99■■□□□ 1.75
CCDC28B-201ENST00000373602 COG2Q14746 738 aa25.99■■□□□ 1.75
CCDC28B-201ENST00000373602 MORN1Q5T089 497 aa25.99■■□□□ 1.75
CCDC28B-201ENST00000373602 FSD1Q9BTV5 496 aa25.99■■□□□ 1.75
CCDC28B-201ENST00000373602 VCPKMTQ9H867 229 aa25.99■■□□□ 1.75
CCDC28B-201ENST00000373602 KANSL2Q9H9L4 492 aa25.99■■□□□ 1.75
CCDC28B-201ENST00000373602 BTBD7Q9P203 1132 aa25.99■■□□□ 1.75
CCDC28B-201ENST00000373602 ROBO3Q96MS0 1386 aa25.98■■□□□ 1.75
CCDC28B-201ENST00000373602 TRIB2Q92519 343 aa25.98■■□□□ 1.75
CCDC28B-201ENST00000373602 DEFB118Q96PH6 123 aa25.98■■□□□ 1.75
CCDC28B-201ENST00000373602 HOXC10Q9NYD6 342 aa25.98■■□□□ 1.75
CCDC28B-201ENST00000373602 MKI67P46013 3256 aaKnown RBP25.98■■□□□ 1.75
CCDC28B-201ENST00000373602 MINDY4BA8MYZ0 360 aa25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 PATL2C9JE40 543 aaKnown RBP25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 EEF2P13639 858 aaKnown RBP25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 TRIM32Q13049 653 aa25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 ZMYM1Q5SVZ6 1142 aa25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 SEC62Q99442 399 aaKnown RBP25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 TANGO6Q9C0B7 1094 aa25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 STAP2Q9UGK3 403 aa25.97■■□□□ 1.75
CCDC28B-201ENST00000373602 RPTORQ8N122 1335 aa25.96■■□□□ 1.75
CCDC28B-201ENST00000373602 RGS2P41220 211 aa25.96■■□□□ 1.75
CCDC28B-201ENST00000373602 TDO2P48775 406 aa25.96■■□□□ 1.75
CCDC28B-201ENST00000373602 TRMT44Q8IYL2 757 aaKnown RBP25.96■■□□□ 1.75
CCDC28B-201ENST00000373602 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.96■■□□□ 1.75
CCDC28B-201ENST00000373602 APPP05067 770 aa25.95■■□□□ 1.74
CCDC28B-201ENST00000373602 RASA1P20936 1047 aa25.95■■□□□ 1.74
CCDC28B-201ENST00000373602 PDE1AP54750 535 aa25.95■■□□□ 1.74
CCDC28B-201ENST00000373602 IFNL3Q8IZI9 196 aa25.95■■□□□ 1.74
CCDC28B-201ENST00000373602 SPICE1Q8N0Z3 855 aa25.95■■□□□ 1.74
CCDC28B-201ENST00000373602 CRISPLD2Q9H0B8 497 aa25.95■■□□□ 1.74
CCDC28B-201ENST00000373602 CWC22Q9HCG8 908 aaKnown RBP25.95■■□□□ 1.74
CCDC28B-201ENST00000373602 HMX1Q9NP08 348 aaPredicted RBP25.95■■□□□ 1.74
CCDC28B-201ENST00000373602 RLFQ13129 1914 aa25.94■■□□□ 1.74
CCDC28B-201ENST00000373602 WDR46O15213 610 aaKnown RBP25.94■■□□□ 1.74
CCDC28B-201ENST00000373602 FARP2O94887 1054 aaPredicted RBP25.94■■□□□ 1.74
CCDC28B-201ENST00000373602 TFRCP02786 760 aaKnown RBP25.94■■□□□ 1.74
CCDC28B-201ENST00000373602 DSG3P32926 999 aa25.94■■□□□ 1.74
CCDC28B-201ENST00000373602 MAP3K21Q5TCX8 1036 aa25.94■■□□□ 1.74
CCDC28B-201ENST00000373602 MKNK2Q9HBH9 465 aa25.94■■□□□ 1.74
CCDC28B-201ENST00000373602 GREB1LQ9C091 1923 aaPredicted RBP25.94■■□□□ 1.74
CCDC28B-201ENST00000373602 SLC15A5A6NIM6 579 aa25.93■■□□□ 1.74
CCDC28B-201ENST00000373602 ZKSCAN1P17029 563 aaPredicted RBP25.93■■□□□ 1.74
CCDC28B-201ENST00000373602 PTPREP23469 700 aa25.93■■□□□ 1.74
CCDC28B-201ENST00000373602 ATP2B2Q01814 1243 aa25.93■■□□□ 1.74
CCDC28B-201ENST00000373602 MAP2K5Q13163 448 aa25.93■■□□□ 1.74
CCDC28B-201ENST00000373602 STK11IPQ8N1F8 1099 aa25.93■■□□□ 1.74
CCDC28B-201ENST00000373602 APBA2Q99767 749 aa25.93■■□□□ 1.74
CCDC28B-201ENST00000373602 NACAP1Q9BZK3 213 aa25.93■■□□□ 1.74
CCDC28B-201ENST00000373602 FLOT1O75955 427 aa25.92■■□□□ 1.74
CCDC28B-201ENST00000373602 WDR78Q5VTH9 848 aa25.92■■□□□ 1.74
CCDC28B-201ENST00000373602 SMC5Q8IY18 1101 aa25.92■■□□□ 1.74
CCDC28B-201ENST00000373602 MB21D1Q8N884 522 aa25.92■■□□□ 1.74
CCDC28B-201ENST00000373602 EVI5LQ96CN4 794 aa25.92■■□□□ 1.74
CCDC28B-201ENST00000373602 RWDD1Q9H446 243 aaPredicted RBP25.92■■□□□ 1.74
CCDC28B-201ENST00000373602 A0A0G2JMZ2 1700 aa25.91■■□□□ 1.74
CCDC28B-201ENST00000373602 PRKAR2AP13861 404 aaKnown RBP25.91■■□□□ 1.74
CCDC28B-201ENST00000373602 CCL14Q16627 93 aa25.91■■□□□ 1.74
CCDC28B-201ENST00000373602 MOV10L1Q9BXT6 1211 aaKnown RBP25.91■■□□□ 1.74
CCDC28B-201ENST00000373602 SPATC1LQ9H0A9 340 aa25.91■■□□□ 1.74
CCDC28B-201ENST00000373602 ZNF287Q9HBT7 754 aa25.91■■□□□ 1.74
CCDC28B-201ENST00000373602 GOPCQ9HD26 462 aa25.91■■□□□ 1.74
CCDC28B-201ENST00000373602 IVNS1ABPQ9Y6Y0 642 aa25.91■■□□□ 1.74
CCDC28B-201ENST00000373602 GRB14Q14449 540 aa25.9■■□□□ 1.74
CCDC28B-201ENST00000373602 SHCBP1Q8NEM2 672 aa25.9■■□□□ 1.74
CCDC28B-201ENST00000373602 ATG4CQ96DT6 458 aa25.9■■□□□ 1.74
CCDC28B-201ENST00000373602 HTATIP2Q9BUP3 242 aa25.9■■□□□ 1.74
CCDC28B-201ENST00000373602 NYAP2Q9P242 653 aa25.9■■□□□ 1.74
CCDC28B-201ENST00000373602 HOXC6P09630 235 aa25.89■■□□□ 1.74
CCDC28B-201ENST00000373602 ZNF444Q8N0Y2 327 aaPredicted RBP25.89■■□□□ 1.74
CCDC28B-201ENST00000373602 EXOC6Q8TAG9 804 aa25.89■■□□□ 1.74
CCDC28B-201ENST00000373602 LNPKQ9C0E8 428 aa25.89■■□□□ 1.74
CCDC28B-201ENST00000373602 NAPBQ9H115 298 aa25.89■■□□□ 1.74
CCDC28B-201ENST00000373602 IGKV6D-41A0A0C4DH26 115 aa25.88■■□□□ 1.73
CCDC28B-201ENST00000373602 PRDM1O75626 825 aa25.88■■□□□ 1.73
CCDC28B-201ENST00000373602 CACNB2Q08289 660 aaPredicted RBP25.88■■□□□ 1.73
CCDC28B-201ENST00000373602 DPF3Q92784 378 aa25.88■■□□□ 1.73
CCDC28B-201ENST00000373602 ADAMTS5Q9UNA0 930 aa25.88■■□□□ 1.73
CCDC28B-201ENST00000373602 PARP14Q460N5 1801 aa25.87■■□□□ 1.73
CCDC28B-201ENST00000373602 SLC34A2O95436 690 aa25.87■■□□□ 1.73
CCDC28B-201ENST00000373602 ERCC3P19447 782 aa25.87■■□□□ 1.73
CCDC28B-201ENST00000373602 CCDC129Q6ZRS4 1044 aa25.87■■□□□ 1.73
CCDC28B-201ENST00000373602 ANKLE1Q8NAG6 615 aa25.87■■□□□ 1.73
CCDC28B-201ENST00000373602 FOXP2O15409 715 aa25.86■■□□□ 1.73
CCDC28B-201ENST00000373602 STRNO43815 780 aa25.86■■□□□ 1.73
CCDC28B-201ENST00000373602 IGHDP01880 384 aa25.86■■□□□ 1.73
CCDC28B-201ENST00000373602 PPARAQ07869 468 aa25.86■■□□□ 1.73
CCDC28B-201ENST00000373602 TICAM2Q86XR7 235 aa25.86■■□□□ 1.73
CCDC28B-201ENST00000373602 FBXO28Q9NVF7 368 aa25.86■■□□□ 1.73
CCDC28B-201ENST00000373602 FLRT1Q9NZU1 646 aa25.86■■□□□ 1.73
CCDC28B-201ENST00000373602 H0YGN5 161 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 SLC3A2P08195 630 aaKnown RBP25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 PDE4BQ07343 736 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 PLS1Q14651 629 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 FAM83BQ5T0W9 1011 aa25.85■■□□□ 1.73
CCDC28B-201ENST00000373602 B4GALNT3Q6L9W6 998 aa25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms