RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 VGLL2Q8N8G2 317 aa13.28□□□□□ -0.28
USF1-201ENST00000368019 MS4A4AQ96JQ5 239 aa13.28□□□□□ -0.28
USF1-201ENST00000368019 TLR7Q9NYK1 1049 aaKnown RBP13.28□□□□□ -0.28
USF1-201ENST00000368019 DBNLQ9UJU6 430 aaKnown RBP13.28□□□□□ -0.28
USF1-201ENST00000368019 WDR19Q8NEZ3 1342 aa13.28□□□□□ -0.28
USF1-201ENST00000368019 CRKP46108 304 aa13.27□□□□□ -0.29
USF1-201ENST00000368019 HDLBPQ00341 1268 aaKnown RBP13.27□□□□□ -0.29
USF1-201ENST00000368019 CRHR2Q13324 411 aa13.27□□□□□ -0.29
USF1-201ENST00000368019 LRRFIP1Q32MZ4 808 aaKnown RBP13.27□□□□□ -0.29
USF1-201ENST00000368019 LRRC24Q50LG9 513 aa13.27□□□□□ -0.29
USF1-201ENST00000368019 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.27□□□□□ -0.29
USF1-201ENST00000368019 MRPS27Q92552 414 aaKnown RBP13.27□□□□□ -0.29
USF1-201ENST00000368019 TRIM17Q9Y577 477 aa13.27□□□□□ -0.29
USF1-201ENST00000368019 MYH13Q9UKX3 1938 aa13.27□□□□□ -0.29
USF1-201ENST00000368019 PTPDC1A2A3K4 754 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 CAP1Q01518 475 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 ZMYM1Q5SVZ6 1142 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 OTUD7BQ6GQQ9 843 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 BRAPQ7Z569 592 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 FCHSD1Q86WN1 690 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 FMR1NBQ8N0W7 255 aaPredicted RBP13.26□□□□□ -0.29
USF1-201ENST00000368019 KCNG4Q8TDN1 519 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 OPTNQ96CV9 577 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 TIGD1Q96MW7 591 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 USP28Q96RU2 1077 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 MRIQ9BWK5 157 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 SRRTQ9BXP5 876 aaKnown RBP13.26□□□□□ -0.29
USF1-201ENST00000368019 TMEM39BQ9GZU3 492 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 POLR3EQ9NVU0 708 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 TAF6LQ9Y6J9 622 aa13.26□□□□□ -0.29
USF1-201ENST00000368019 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.26□□□□□ -0.29
USF1-201ENST00000368019 TCP10L2B9ZVM9 353 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 IKBKBO14920 756 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 PDE8BO95263 885 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 CTDNEP1O95476 244 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 STK3Q13188 491 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 TPRNQ4KMQ1 711 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 FSIP1Q8NA03 581 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.25□□□□□ -0.297e-6■□□□□ 9.2
USF1-201ENST00000368019 TBC1D22AQ8WUA7 517 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 CNKSR2Q8WXI2 1034 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 TCEANC2Q96MN5 208 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 ELP3Q9H9T3 547 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 PCDH10Q9P2E7 1040 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 IQSEC3Q9UPP2 1182 aaPredicted RBP13.25□□□□□ -0.29
USF1-201ENST00000368019 PTPN22Q9Y2R2 807 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 MYH7P12883 1935 aa13.25□□□□□ -0.29
USF1-201ENST00000368019 BRCA2P51587 3418 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 PHLPP2Q6ZVD8 1323 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 CCDC66A2RUB6 948 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 ATP8B1O43520 1251 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 DHX16O60231 1041 aaKnown RBP13.24□□□□□ -0.29
USF1-201ENST00000368019 FGFR2P21802 821 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 MAP3K9P80192 1104 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 ELOA2Q8IYF1 753 aaPredicted RBP13.24□□□□□ -0.29
USF1-201ENST00000368019 CD99L2Q8TCZ2 262 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 BRI3BPQ8WY22 251 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 ARID3AQ99856 593 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 GOLPH3LQ9H4A5 285 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 FBXO3Q9UK99 471 aa13.24□□□□□ -0.29
USF1-201ENST00000368019 ZHX1Q9UKY1 873 aaPredicted RBP13.24□□□□□ -0.29
USF1-201ENST00000368019 POTEFA5A3E0 1075 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 SPDYE4A6NLX3 237 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 TPM1P09493 284 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 SLFN14P0C7P3 912 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 H2AFXP16104 143 aaPredicted RBP13.23□□□□□ -0.29
USF1-201ENST00000368019 TNNI2P48788 182 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 BCAMP50895 628 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 NLRP12P59046 1061 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 FGD1P98174 961 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 SP3Q02447 781 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 COL9A3Q14050 684 aaPredicted RBP13.23□□□□□ -0.29
USF1-201ENST00000368019 VGLL4Q14135 290 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 CAVIN4Q5BKX8 364 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 METTL24Q5JXM2 366 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 FKBP1CQ5VVH2 108 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 APOBEC3HQ6NTF7 200 aaKnown RBP13.23□□□□□ -0.29
USF1-201ENST00000368019 STOX1Q6ZVD7 989 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 VPS37DQ86XT2 251 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 KLHDC4Q8TBB5 520 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 ARMC5Q96C12 935 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 ZDHHC15Q96MV8 337 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 KIAA1468Q9P260 1216 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 ZNF215Q9UL58 517 aaPredicted RBP13.23□□□□□ -0.29
USF1-201ENST00000368019 SUGT1Q9Y2Z0 365 aa13.23□□□□□ -0.29
USF1-201ENST00000368019 FAM237AA0A1B0GTK4 181 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 CBFA2T2O43439 604 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 CIAO1O76071 339 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 ZFYP08048 801 aaPredicted RBP13.22□□□□□ -0.29
USF1-201ENST00000368019 GTF2A2P52657 109 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 TFCP2Q12800 502 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 BMS1Q14692 1282 aaKnown RBP13.22□□□□□ -0.29
USF1-201ENST00000368019 NBPF11Q86T75 865 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 FAM83AQ86UY5 434 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 AOPEPQ8N6M6 819 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 LINC00301Q8NCQ3 95 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 TEKT1Q969V4 418 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 EFCC1Q9HA90 598 aa13.22□□□□□ -0.29
USF1-201ENST00000368019 CCL15-CCL14A0A0B4J2E2 113 aa13.21□□□□□ -0.29
USF1-201ENST00000368019 SPDYE5A6NIY4 337 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms