RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 FAM47AQ5JRC9 791 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 METTL16Q86W50 562 aaKnown RBP10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 CCAR1Q8IX12 1150 aaKnown RBP10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 TIFAQ96CG3 184 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 CEP126Q9P2H0 1117 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 HERC5Q9UII4 1024 aaKnown RBP10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 ZBTB21Q9ULJ3 1066 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 RABGAP1Q9Y3P9 1069 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 PDS5AQ29RF7 1337 aaKnown RBP10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 C19orf81C9J6K1 198 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 ASNSP08243 561 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 BMP1P13497 986 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 EMP3P54852 163 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 MRPS5P82675 430 aaKnown RBP10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 TFF2Q03403 129 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 AKNAD1Q5T1N1 836 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 WDR78Q5VTH9 848 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 C1orf53Q5VUE5 145 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 WDR63Q8IWG1 891 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 TEX11Q8IYF3 940 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 ZGPATQ8N5A5 531 aaKnown RBP10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 MRPL50Q8N5N7 158 aaKnown RBP10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 ARRDC4Q8NCT1 418 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 PBX4Q9BYU1 374 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 EPHX3Q9H6B9 360 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 HMG20BQ9P0W2 317 aa10.54□□□□□ -0.72
HMGB1P39-201ENST00000366304 KBTBD13C9JR72 458 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 SEPT4O43236 478 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 CLTBP09497 229 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 FPGSQ05932 587 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 FAAP100Q0VG06 881 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 ZYXQ15942 572 aaKnown RBP10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 RASIP1Q5U651 963 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 CATSPERGQ6ZRH7 1159 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 ERICH6Q7L0X2 663 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 ADGRA1Q86SQ6 560 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 SLF2Q8IX21 1173 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 KHSRPQ92945 711 aaKnown RBP eCLIP10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 LRFN3Q9BTN0 628 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 PI4KBQ9UBF8 816 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 PALD1Q9ULE6 856 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 PHF24Q9UPV7 400 aa10.53□□□□□ -0.72
HMGB1P39-201ENST00000366304 SPDYE16A6NNV3 312 aaPredicted RBP10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 PQBP1O60828 265 aaKnown RBP10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 ADORA2AP29274 412 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 KCNQ1P51787 676 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 OLFML2BQ68BL8 750 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 SPTY2D1Q68D10 685 aaPredicted RBP10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L2Q6R6M4 530 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 MAPKAPK5Q8IW41 473 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 ACER1Q8TDN7 264 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 GTF3C2Q8WUA4 911 aaPredicted RBP10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 LENG1Q96BZ8 264 aaPredicted RBP10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 XAGE2Q96GT9 111 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 C12orf42Q96LP6 360 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 CWC22Q9HCG8 908 aaKnown RBP10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 C11orf16Q9NQ32 467 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 GPHNQ9NQX3 736 aaPredicted RBP10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 TACC3Q9Y6A5 838 aa10.52□□□□□ -0.73
HMGB1P39-201ENST00000366304 MUC6Q6W4X9 2439 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L15C9J2P7 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L13C9JLJ4 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L11C9JVI0 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L18D6R9N7 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L22D6RA61 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L17D6RBQ6 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L19D6RCP7 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L20D6RJB6 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 PGK1P00558 417 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 GH2P01242 217 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 RAG1P15918 1043 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 TAL1P17542 331 aaPredicted RBP10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 VCAM1P19320 739 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 IL15P40933 162 aaPredicted RBP10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 USP17L24Q0WX57 530 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 TMEM240Q5SV17 173 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 LBX2Q6XYB7 198 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 TGFBRAP1Q8WUH2 860 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 MOV10L1Q9BXT6 1211 aaKnown RBP10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 SAP30BPQ9UHR5 308 aaKnown RBP10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 FLT1P17948 1338 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 TRANK1O15050 2925 aa10.51□□□□□ -0.73
HMGB1P39-201ENST00000366304 A0A1B0GUL7 405 aa10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 A0A1W2PQ45 241 aaPredicted RBP10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 A0A1W2PQY0 241 aa10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 GLRX3O76003 335 aaKnown RBP10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 MAP4K4O95819 1239 aaPredicted RBP10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 HOXB1P14653 301 aaPredicted RBP10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 CCNA1P78396 465 aa10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 TFCP2Q12800 502 aa10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 SPATA5Q8NB90 893 aa10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 GAS2L1Q99501 681 aaPredicted RBP10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 C1QTNF1Q9BXJ1 281 aa10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 TMEM39AQ9NV64 488 aa10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 AATFQ9NY61 560 aaKnown RBP eCLIP10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 CXXC1Q9P0U4 656 aaPredicted RBP10.5□□□□□ -0.73
HMGB1P39-201ENST00000366304 YBX2Q9Y2T7 364 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms