RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 COG7P83436 770 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLIP1-202ENST00000358808 DPP8Q6V1X1 898 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-202ENST00000358808 PALM2Q8IXS6 379 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 PDZD8Q8NEN9 1154 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 VPS16Q9H269 839 aa11.25□□□□□ -0.61
CLIP1-202ENST00000358808 TSPYL2Q9H2G4 693 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-202ENST00000358808 BCRP11274 1271 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 SUPT20HQ8NEM7 779 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 MEIS3Q99687 375 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 TYW5A2RUC4 315 aaKnown RBP11.24□□□□□ -0.61
CLIP1-202ENST00000358808 BEND3Q5T5X7 828 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 SDCCAG3Q96C92 435 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 LMCD1Q9NZU5 365 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 ANGPTL3Q9Y5C1 460 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 STAM2O75886 525 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 CFBP00751 764 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 TCP10Q12799 353 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 BRAPQ7Z569 592 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 DCLK2Q8N568 766 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 MRPL44Q9H9J2 332 aaKnown RBP11.24□□□□□ -0.61
CLIP1-202ENST00000358808 ANAPC5Q9UJX4 755 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 PNMA2Q9UL42 364 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 DNM3Q9UQ16 869 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 PA2G4Q9UQ80 394 aaKnown RBP11.24□□□□□ -0.61
CLIP1-202ENST00000358808 PCDHB15Q9Y5E8 787 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 ADCY7P51828 1080 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 ANKRD20A3Q5VUR7 823 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 KLHL7Q8IXQ5 586 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 AFAP1L1Q8TED9 768 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 ZKSCAN5Q9Y2L8 839 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 CEP104O60308 925 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 PRIM1P49642 420 aaKnown RBP11.24□□□□□ -0.61
CLIP1-202ENST00000358808 SF3A3Q12874 501 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLIP1-202ENST00000358808 GPIHBP1Q8IV16 184 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 IP6K1Q92551 441 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 KRT12Q99456 494 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 GLT8D2Q9H1C3 349 aa11.24□□□□□ -0.61
CLIP1-202ENST00000358808 ARHGAP42A6NI28 874 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 HNRNPCL2B2RXH8 293 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 SPECC1L-ADORA2AF8WAN1 911 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 HNRNPCL1O60812 293 aaKnown RBP11.23□□□□□ -0.61
CLIP1-202ENST00000358808 HIBADHP31937 336 aaKnown RBP11.23□□□□□ -0.61
CLIP1-202ENST00000358808 TFCP2Q12800 502 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 LRMPQ12912 555 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 CCDC93Q567U6 631 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 GADL1Q6ZQY3 521 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 TTC30AQ86WT1 665 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 RTEL1Q9NZ71 1219 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 IPO11Q9UI26 975 aaKnown RBP11.23□□□□□ -0.61
CLIP1-202ENST00000358808 SLC1A4P43007 532 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 FBXW4P57775 412 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 FAM102BQ5T8I3 360 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 OTUD6AQ7L8S5 288 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 NME8Q8N427 588 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 CXorf38Q8TB03 319 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 OLA1Q9NTK5 396 aaKnown RBP11.23□□□□□ -0.61
CLIP1-202ENST00000358808 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.23□□□□□ -0.61
CLIP1-202ENST00000358808 SYNJ2BP-COX16A0A087WUM0 186 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 H7C1D1 291 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 PARP10Q53GL7 1025 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 PDZD4Q76G19 769 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-202ENST00000358808 NLRX1Q86UT6 975 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 IFT20Q8IY31 132 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 PLCB1Q9NQ66 1216 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 COX16Q9P0S2 106 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 MAPK8IP1Q9UQF2 711 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 FNDC3AQ9Y2H6 1198 aaKnown RBP11.23□□□□□ -0.61
CLIP1-202ENST00000358808 PHEXP78562 749 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 TYRO3Q06418 890 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 RAD51AP2Q09MP3 1159 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 DBN1Q16643 649 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 CWF19L2Q2TBE0 894 aaKnown RBP11.23□□□□□ -0.61
CLIP1-202ENST00000358808 B4GALNT4Q76KP1 1039 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 ABI1Q8IZP0 508 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 MGARPQ8TDB4 240 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 LRFN2Q9ULH4 789 aa11.23□□□□□ -0.61
CLIP1-202ENST00000358808 ARHGAP44Q17R89 818 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 LINS1Q8NG48 757 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 SNX29Q8TEQ0 813 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 GANCQ8TET4 914 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 MRPL46Q9H2W6 279 aaKnown RBP11.22□□□□□ -0.61
CLIP1-202ENST00000358808 AS3MTQ9HBK9 375 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 RAB20Q9NX57 234 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 CDC42BPAQ5VT25 1732 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ASXL1Q8IXJ9 1541 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 TNNC2P02585 160 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 SDSP20132 328 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ATP8B2P98198 1209 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 PPP2R3AQ06190 1150 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 TRIM14Q14142 442 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ACBD5Q5T8D3 534 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ARHGEF16Q5VV41 709 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 CYP26C1Q6V0L0 522 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 CSGALNACT2Q8N6G5 542 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 ARHGAP45Q92619 1136 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 NAPGQ99747 312 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-202ENST00000358808 EFCC1Q9HA90 598 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 LTKP29376 864 aa11.22□□□□□ -0.61
CLIP1-202ENST00000358808 SLC9C1Q4G0N8 1177 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms