RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TTC38Q5R3I4 469 aa22.11■■□□□ 1.13
COL9A3-201ENST00000343916 C12orf60Q5U649 245 aa22.11■■□□□ 1.13
COL9A3-201ENST00000343916 TAF1LQ8IZX4 1826 aa22.11■■□□□ 1.13
COL9A3-201ENST00000343916 PPP4R3BQ5MIZ7 849 aa22.1■■□□□ 1.13
COL9A3-201ENST00000343916 SLC44A5Q8NCS7 719 aa22.1■■□□□ 1.13
COL9A3-201ENST00000343916 INTS13Q9NVM9 706 aa22.1■■□□□ 1.13
COL9A3-201ENST00000343916 MTMR7Q9Y216 660 aa22.1■■□□□ 1.13
COL9A3-201ENST00000343916 NFE2L3Q9Y4A8 694 aa22.1■■□□□ 1.13
COL9A3-201ENST00000343916 PAXBP1Q9Y5B6 917 aa22.1■■□□□ 1.13
COL9A3-201ENST00000343916 VWA3AA6NCI4 1184 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 CBX1P83916 185 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 PTGDRQ13258 359 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 STAG2Q8N3U4 1231 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 CCDC112Q8NEF3 446 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 WDR66Q8TBY9 1149 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 TGFBRAP1Q8WUH2 860 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 MED15Q96RN5 788 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 MAST2Q6P0Q8 1798 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 USP17L3A6NCW0 530 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 USP17L4A6NCW7 530 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 USP17L1Q7RTZ2 530 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 KAT14Q9H8E8 782 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 LEMD3Q9Y2U8 911 aa22.09■■□□□ 1.13
COL9A3-201ENST00000343916 PFKFB3Q16875 520 aaPredicted RBP22.08■■□□□ 1.13
COL9A3-201ENST00000343916 GPKOWQ92917 476 aaPredicted RBP eCLIP22.08■■□□□ 1.13
COL9A3-201ENST00000343916 XDHP47989 1333 aa22.08■■□□□ 1.13
COL9A3-201ENST00000343916 SBF2Q86WG5 1849 aa22.08■■□□□ 1.13
COL9A3-201ENST00000343916 CBFA2T2O43439 604 aa22.08■■□□□ 1.13
COL9A3-201ENST00000343916 NAA30Q147X3 362 aaPredicted RBP22.08■■□□□ 1.13
COL9A3-201ENST00000343916 PRR5LQ6MZQ0 368 aa22.08■■□□□ 1.13
COL9A3-201ENST00000343916 MLKLQ8NB16 471 aa22.08■■□□□ 1.13
COL9A3-201ENST00000343916 PNMA1Q8ND90 353 aa22.08■■□□□ 1.13
COL9A3-201ENST00000343916 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.07■■□□□ 1.12
COL9A3-201ENST00000343916 ONECUT3O60422 494 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-201ENST00000343916 MCM7P33993 719 aa22.07■■□□□ 1.12
COL9A3-201ENST00000343916 PLCD1P51178 756 aa22.07■■□□□ 1.12
COL9A3-201ENST00000343916 KANK3Q6NY19 840 aa22.07■■□□□ 1.12
COL9A3-201ENST00000343916 VSTM4Q8IW00 320 aa22.07■■□□□ 1.12
COL9A3-201ENST00000343916 SPATA20Q8TB22 786 aa22.07■■□□□ 1.12
COL9A3-201ENST00000343916 STAMQ92783 540 aa22.07■■□□□ 1.12
COL9A3-201ENST00000343916 MKNK2Q9HBH9 465 aa22.07■■□□□ 1.12
COL9A3-201ENST00000343916 SAP30BPQ9UHR5 308 aaKnown RBP22.07■■□□□ 1.12
COL9A3-201ENST00000343916 GPSM2P81274 684 aa22.07■■□□□ 1.12
COL9A3-201ENST00000343916 TRPC5Q9UL62 973 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-201ENST00000343916 TOP1P11387 765 aaKnown RBP22.06■■□□□ 1.12
COL9A3-201ENST00000343916 ZNF804AQ7Z570 1209 aa22.06■■□□□ 1.12
COL9A3-201ENST00000343916 MAPKAPK5Q8IW41 473 aa22.06■■□□□ 1.12
COL9A3-201ENST00000343916 FERMT2Q96AC1 680 aa22.06■■□□□ 1.12
COL9A3-201ENST00000343916 PAGE5Q96GU1 130 aa22.06■■□□□ 1.12
COL9A3-201ENST00000343916 PPP1R13BQ96KQ4 1090 aa22.06■■□□□ 1.12
COL9A3-201ENST00000343916 SAMSN1Q9NSI8 373 aaKnown RBP22.06■■□□□ 1.12
COL9A3-201ENST00000343916 SLFN14P0C7P3 912 aa22.06■■□□□ 1.12
COL9A3-201ENST00000343916 CDK11BP21127 795 aaKnown RBP22.06■■□□□ 1.12
COL9A3-201ENST00000343916 KIF5BP33176 963 aa22.06■■□□□ 1.12
COL9A3-201ENST00000343916 ATP2C1P98194 919 aaPredicted RBP22.06■■□□□ 1.12
COL9A3-201ENST00000343916 RPGRQ92834 1020 aaKnown RBP22.06■■□□□ 1.12
COL9A3-201ENST00000343916 KCND1Q9NSA2 647 aa22.06■■□□□ 1.12
COL9A3-201ENST00000343916 LY75O60449 1722 aa22.05■■□□□ 1.12
COL9A3-201ENST00000343916 TRIML1Q8N9V2 468 aa22.05■■□□□ 1.12
COL9A3-201ENST00000343916 RASGRP4Q8TDF6 673 aa22.05■■□□□ 1.12
COL9A3-201ENST00000343916 TSPY3P0CV98 308 aa22.05■■□□□ 1.12
COL9A3-201ENST00000343916 TSPY8P0CW00 308 aa22.05■■□□□ 1.12
COL9A3-201ENST00000343916 ZNF18P17022 549 aa22.05■■□□□ 1.12
COL9A3-201ENST00000343916 KLHL10Q6JEL2 608 aa22.05■■□□□ 1.12
COL9A3-201ENST00000343916 SEPT12Q8IYM1 358 aa22.05■■□□□ 1.12
COL9A3-201ENST00000343916 SMYD4Q8IYR2 804 aaPredicted RBP22.05■■□□□ 1.12
COL9A3-201ENST00000343916 ENOX1Q8TC92 643 aaKnown RBP22.05■■□□□ 1.12
COL9A3-201ENST00000343916 FAM205AQ6ZU69 1335 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 UFL1O94874 794 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 BAG3O95817 575 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 BMP15O95972 392 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 NCBP1Q09161 790 aaKnown RBP22.04■■□□□ 1.12
COL9A3-201ENST00000343916 IL17AQ16552 155 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 TYW1BQ6NUM6 668 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 RASGRP2Q7LDG7 609 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 DGKHQ86XP1 1220 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 DACH1Q9UI36 760 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 STX8Q9UNK0 236 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 MORC2Q9Y6X9 1032 aaPredicted RBP22.04■■□□□ 1.12
COL9A3-201ENST00000343916 CD44P16070 742 aaKnown RBP22.04■■□□□ 1.12
COL9A3-201ENST00000343916 PDCL2Q8N4E4 241 aa22.04■■□□□ 1.12
COL9A3-201ENST00000343916 STX17P56962 302 aa22.03■■□□□ 1.12
COL9A3-201ENST00000343916 SLC35G1Q2M3R5 365 aa22.03■■□□□ 1.12
COL9A3-201ENST00000343916 SH3RF1Q7Z6J0 888 aa22.03■■□□□ 1.12
COL9A3-201ENST00000343916 CD209Q9NNX6 404 aa22.03■■□□□ 1.12
COL9A3-201ENST00000343916 MAD2L2Q9UI95 211 aa22.03■■□□□ 1.12
COL9A3-201ENST00000343916 NRDCO43847 1150 aa22.03■■□□□ 1.12
COL9A3-201ENST00000343916 TMED8Q6PL24 325 aaPredicted RBP22.03■■□□□ 1.12
COL9A3-201ENST00000343916 ANKRD7Q92527 254 aa22.03■■□□□ 1.12
COL9A3-201ENST00000343916 RTFDC1Q9BY42 306 aaPredicted RBP22.03■■□□□ 1.12
COL9A3-201ENST00000343916 QTRT2Q9H974 415 aaKnown RBP22.03■■□□□ 1.12
COL9A3-201ENST00000343916 SPDYE4A6NLX3 237 aa22.02■■□□□ 1.12
COL9A3-201ENST00000343916 MYO1BO43795 1136 aa22.02■■□□□ 1.12
COL9A3-201ENST00000343916 CDC25AP30304 524 aa22.02■■□□□ 1.12
COL9A3-201ENST00000343916 GSTO1P78417 241 aa22.02■■□□□ 1.12
COL9A3-201ENST00000343916 ZNF444Q8N0Y2 327 aaPredicted RBP22.02■■□□□ 1.12
COL9A3-201ENST00000343916 NOL10Q9BSC4 688 aaKnown RBP22.02■■□□□ 1.12
COL9A3-201ENST00000343916 BTDP43251 543 aa22.02■■□□□ 1.12
COL9A3-201ENST00000343916 DPYDQ12882 1025 aa22.02■■□□□ 1.12
COL9A3-201ENST00000343916 AMOTL1Q8IY63 956 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms