RNA–Protein interactions for RNA: ENST00000339255.2

NIPAL3-202, Transcript of NIPA like domain containing 3, humanhuman

TSL 5 BASIC

Gene NIPAL3, Length 1,676 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-202ENST00000339255 SHROOM1Q2M3G4 852 aaPredicted RBP16.94■□□□□ 0.3
NIPAL3-202ENST00000339255 MAP1SQ66K74 1059 aaPredicted RBP16.94■□□□□ 0.3
NIPAL3-202ENST00000339255 CLEC10AQ8IUN9 316 aa16.94■□□□□ 0.3
NIPAL3-202ENST00000339255 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.94■□□□□ 0.3
NIPAL3-202ENST00000339255 INPP5BP32019 993 aa16.93■□□□□ 0.3
NIPAL3-202ENST00000339255 GRM4Q14833 912 aa16.93■□□□□ 0.3
NIPAL3-202ENST00000339255 GMCL1P1Q8NEA9 526 aa16.93■□□□□ 0.3
NIPAL3-202ENST00000339255 USP2O75604 605 aaPredicted RBP16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 PDIA4P13667 645 aaKnown RBP16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 RXRAP19793 462 aa16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 MAP3K11Q16584 847 aa16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 ASPRV1Q53RT3 343 aa16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 LRRC47Q8N1G4 583 aaKnown RBP16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 SPRYD3Q8NCJ5 442 aa16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 NSUN7Q8NE18 718 aaKnown RBP16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 LZTS2Q9BRK4 669 aa16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 GPBP1L1Q9HC44 474 aaPredicted RBP16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 GOPCQ9HD26 462 aa16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 FAM217BQ9NTX9 383 aaPredicted RBP16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 CSADQ9Y600 493 aa16.92■□□□□ 0.3
NIPAL3-202ENST00000339255 UNCXA6NJT0 531 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 USP17L5A8MUK1 530 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 PARP1P09874 1014 aaKnown RBP16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 SNHG28P0DPA3 235 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 IFNAR1P17181 557 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 CDC27P30260 824 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 FKBP1BP68106 108 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 ARMC9Q7Z3E5 817 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 RAB11FIP4Q86YS3 637 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 SIAH1Q8IUQ4 282 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 CCDC144CPQ8IYA2 1237 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 SMARCC2Q8TAQ2 1214 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 AS3MTQ9HBK9 375 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 CIZ1Q9ULV3 898 aaPredicted RBP16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 TMX2Q9Y320 296 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 STK36Q9NRP7 1315 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 BAZ2BQ9UIF8 2168 aaKnown RBP16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 PTPDC1A2A3K4 754 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 PDHBP11177 359 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 PDCP20941 246 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 ADD1P35611 737 aaKnown RBP16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 MAP3K9P80192 1104 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 GPATCH4Q5T3I0 446 aaKnown RBP16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 CHADLQ6NUI6 762 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 TMTC3Q6ZXV5 915 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 TRIM22Q8IYM9 498 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 DCAF4Q8WV16 495 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 GMCL1Q96IK5 515 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 FOXD4L1Q9NU39 408 aa16.91■□□□□ 0.3
NIPAL3-202ENST00000339255 PTPRFP10586 1907 aa16.9■□□□□ 0.3
NIPAL3-202ENST00000339255 CTDNEP1O95476 244 aa16.9■□□□□ 0.3
NIPAL3-202ENST00000339255 TTLL12Q14166 644 aaPredicted RBP16.9■□□□□ 0.3
NIPAL3-202ENST00000339255 NTRK3Q16288 839 aa16.9■□□□□ 0.3
NIPAL3-202ENST00000339255 ANKRD13AQ8IZ07 590 aa16.9■□□□□ 0.3
NIPAL3-202ENST00000339255 ZKSCAN4Q969J2 545 aaPredicted RBP16.9■□□□□ 0.3
NIPAL3-202ENST00000339255 WDR18Q9BV38 432 aa16.9■□□□□ 0.3
NIPAL3-202ENST00000339255 RBM27Q9P2N5 1060 aaKnown RBP16.9■□□□□ 0.3
NIPAL3-202ENST00000339255 PALM3A6NDB9 673 aaPredicted RBP16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 PTPRAP18433 802 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 SMARCA1P28370 1054 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 GJB2P29033 226 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 DDIT3P35638 169 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 VGLL4Q14135 290 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 LPAR1Q92633 364 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 FEZ1Q99689 392 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 KIAA1683Q9H0B3 1180 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 MAD2L2Q9UI95 211 aa16.89■□□□□ 0.29
NIPAL3-202ENST00000339255 A0A1W2PRG0 241 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 F5H6K3 240 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 USP14P54578 494 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 KLRC3Q07444 240 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 ZNF543Q08ER8 600 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 PRKG1Q13976 671 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 DLK2Q6UY11 383 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 FAM184AQ8NB25 1140 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 RNF26Q9BY78 433 aaPredicted RBP16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 VCPKMTQ9H867 229 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 TRAF5O00463 557 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 FMNL1O95466 1100 aaPredicted RBP16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 NDUFB10O96000 172 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 SLC1A4P43007 532 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 SSRP1Q08945 709 aaKnown RBP16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 SLFN13Q68D06 897 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 ZNF280CQ8ND82 737 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 ACER1Q8TDN7 264 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 WASF1Q92558 559 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 SPZ1Q9BXG8 430 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 ORC3Q9UBD5 711 aaPredicted RBP16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 MTMR7Q9Y216 660 aa16.88■□□□□ 0.29
NIPAL3-202ENST00000339255 KLRF2D3W0D1 207 aa16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 JAK2O60674 1132 aa16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 ECE1P42892 770 aa16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 AKAP17AQ02040 695 aaKnown RBP16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 FUT2Q10981 343 aa16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 CCDC96Q2M329 555 aa16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 USP17L2Q6R6M4 530 aa16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 RGS22Q8NE09 1264 aa16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 RBM46Q8TBY0 533 aaKnown RBP16.87■□□□□ 0.29
NIPAL3-202ENST00000339255 FZD1Q9UP38 647 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms