RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TAOK2Q9UL54 1235 aa21.31■■□□□ 1
HMGA1-201ENST00000311487 GREB1LQ9C091 1923 aaPredicted RBP21.31■■□□□ 1
HMGA1-201ENST00000311487 USP17L10C9JJH3 530 aa21.3■■□□□ 1
HMGA1-201ENST00000311487 PPATQ06203 517 aa21.3■■□□□ 1
HMGA1-201ENST00000311487 NUP133Q8WUM0 1156 aa21.3■■□□□ 1
HMGA1-201ENST00000311487 TTC14Q96N46 770 aa21.3■■□□□ 1
HMGA1-201ENST00000311487 NYAP2Q9P242 653 aa21.3■■□□□ 1
HMGA1-201ENST00000311487 STK3Q13188 491 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 SPRYD7Q5W111 196 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 DGKHQ86XP1 1220 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 PNMA1Q8ND90 353 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 IL17RAQ96F46 866 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 TMEM87BQ96K49 555 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 AS3MTQ9HBK9 375 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 PHIPQ8WWQ0 1821 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 MYH4Q9Y623 1939 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 CCDC69A6NI79 296 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 PPFIA3O75145 1194 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 GOLGA8HP0CJ92 632 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 BACE1P56817 501 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 DEFB115Q30KQ5 88 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 EMILIN3Q9NT22 766 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 TMX2Q9Y320 296 aa21.29■■□□□ 1
HMGA1-201ENST00000311487 FRMPD2Q68DX3 1309 aaPredicted RBP21.29■■□□□ 1
HMGA1-201ENST00000311487 KLF18A0A0U1RQI7 1052 aa21.28■■□□□ 1
HMGA1-201ENST00000311487 F5H6K3 240 aa21.28■■□□□ 1
HMGA1-201ENST00000311487 AOC2O75106 756 aa21.28■■□□□ 1
HMGA1-201ENST00000311487 TOP1P11387 765 aaKnown RBP21.28■■□□□ 1
HMGA1-201ENST00000311487 KLRC3Q07444 240 aa21.28■■□□□ 1
HMGA1-201ENST00000311487 RABEP1Q15276 862 aa21.28■■□□□ 1
HMGA1-201ENST00000311487 GADL1Q6ZQY3 521 aa21.28■■□□□ 1
HMGA1-201ENST00000311487 MICU3Q86XE3 530 aa21.28■■□□□ 1
HMGA1-201ENST00000311487 FAM155AB1AL88 458 aaPredicted RBP21.27■■□□□ 1
HMGA1-201ENST00000311487 PPIL2Q13356 520 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 USP17L2Q6R6M4 530 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 KCTD1Q719H9 257 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 WDR18Q9BV38 432 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 CPVLQ9H3G5 476 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 NDUFB10O96000 172 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 SLC4A3P48751 1232 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 TREML2Q5T2D2 321 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 CMTR1Q8N1G2 835 aaKnown RBP21.27■■□□□ 1
HMGA1-201ENST00000311487 TPCN1Q9ULQ1 816 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 SLC12A7Q9Y666 1083 aa21.27■■□□□ 1
HMGA1-201ENST00000311487 NOVP48745 357 aa21.26■□□□□ 0.99
HMGA1-201ENST00000311487 CCT2P78371 535 aaKnown RBP21.26■□□□□ 0.99
HMGA1-201ENST00000311487 SLFN13Q68D06 897 aa21.26■□□□□ 0.99
HMGA1-201ENST00000311487 ZNF654Q8IZM8 581 aa21.26■□□□□ 0.99
HMGA1-201ENST00000311487 MKL1Q969V6 931 aa21.26■□□□□ 0.99
HMGA1-201ENST00000311487 GINM1Q9NU53 330 aa21.26■□□□□ 0.99
HMGA1-201ENST00000311487 LARGE1O95461 756 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 FAM83BQ5T0W9 1011 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 GPCPD1Q9NPB8 672 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 WDR19Q8NEZ3 1342 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 SLC10A3P09131 477 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 LIFRP42702 1097 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 CATIPQ7Z7H3 387 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 STAG2Q8N3U4 1231 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 ANKS1AQ92625 1134 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 MS4A4AQ96JQ5 239 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 CAPNS2Q96L46 248 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 KIAA1683Q9H0B3 1180 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 VCPKMTQ9H867 229 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 NCOA5Q9HCD5 579 aaKnown RBP21.25■□□□□ 0.99
HMGA1-201ENST00000311487 GOPCQ9HD26 462 aa21.25■□□□□ 0.99
HMGA1-201ENST00000311487 GOLGA8BA8MQT2 603 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 VCAM1P19320 739 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 SNAPC2Q13487 334 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 CCDC96Q2M329 555 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 CCDC178Q5BJE1 867 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 TTBK2Q6IQ55 1244 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 APOA5Q6Q788 366 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 CCDC82Q8N4S0 544 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 NECAB1Q8N987 351 aa21.24■□□□□ 0.99
HMGA1-201ENST00000311487 CCL15-CCL14A0A0B4J2E2 113 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 UNCXA6NJT0 531 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 RASSF10A6NK89 507 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 PDHBP11177 359 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 HSPA6P17066 643 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 SLC16A2P36021 539 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 SLC1A4P43007 532 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 CCL15Q16663 113 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 TMOD4Q9NZQ9 345 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 DAXXQ9UER7 740 aaPredicted RBP21.23■□□□□ 0.99
HMGA1-201ENST00000311487 KCNH4Q9UQ05 1017 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 A0A0G2JLL6 359 aaPredicted RBP21.23■□□□□ 0.99
HMGA1-201ENST00000311487 VEGFBP49765 207 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 TROAPQ12815 778 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 MOGSQ13724 837 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 PRRT2Q7Z6L0 340 aaPredicted RBP21.23■□□□□ 0.99
HMGA1-201ENST00000311487 SGMS1Q86VZ5 419 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 PIBF1Q8WXW3 757 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 BRI3BPQ8WY22 251 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 PTPN18Q99952 460 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 AGXT2Q9BYV1 514 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 TANGO6Q9C0B7 1094 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 FBXO28Q9NVF7 368 aa21.23■□□□□ 0.99
HMGA1-201ENST00000311487 ST18O60284 1047 aa21.22■□□□□ 0.99
HMGA1-201ENST00000311487 ZBTB48P10074 688 aaPredicted RBP21.22■□□□□ 0.99
HMGA1-201ENST00000311487 PDIA3P30101 505 aaKnown RBP21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms