RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 EMILIN3Q9NT22 766 aa28.79■■■□□ 2.2
HOXC9-201ENST00000303450 IFIT3O14879 490 aaKnown RBP28.78■■■□□ 2.2
HOXC9-201ENST00000303450 PRC1O43663 620 aa28.78■■■□□ 2.2
HOXC9-201ENST00000303450 ANTXR2P58335 489 aa28.78■■■□□ 2.2
HOXC9-201ENST00000303450 MOGSQ13724 837 aa28.78■■■□□ 2.2
HOXC9-201ENST00000303450 ENAHQ8N8S7 591 aaPredicted RBP28.78■■■□□ 2.2
HOXC9-201ENST00000303450 VCPKMTQ9H867 229 aa28.78■■■□□ 2.2
HOXC9-201ENST00000303450 SYNPO2Q9UMS6 1093 aa28.78■■■□□ 2.2
HOXC9-201ENST00000303450 THSD7BQ9C0I4 1608 aa28.77■■■□□ 2.2
HOXC9-201ENST00000303450 TOP1P11387 765 aaKnown RBP28.77■■■□□ 2.2
HOXC9-201ENST00000303450 ANAPC15P60006 121 aa28.77■■■□□ 2.2
HOXC9-201ENST00000303450 OTUD7BQ6GQQ9 843 aa28.77■■■□□ 2.2
HOXC9-201ENST00000303450 RCSD1Q6JBY9 416 aa28.77■■■□□ 2.2
HOXC9-201ENST00000303450 C12orf42Q96LP6 360 aa28.77■■■□□ 2.2
HOXC9-201ENST00000303450 PTPN18Q99952 460 aa28.77■■■□□ 2.2
HOXC9-201ENST00000303450 TMEM47Q9BQJ4 181 aa28.77■■■□□ 2.2
HOXC9-201ENST00000303450 COL9A3Q14050 684 aaPredicted RBP28.76■■■□□ 2.19
HOXC9-201ENST00000303450 BLOC1S2Q6QNY1 142 aa28.76■■■□□ 2.19
HOXC9-201ENST00000303450 DHX32Q7L7V1 743 aaKnown RBP28.76■■■□□ 2.19
HOXC9-201ENST00000303450 IFNL1Q8IU54 200 aa28.76■■■□□ 2.19
HOXC9-201ENST00000303450 BTBD19C9JJ37 291 aa28.75■■■□□ 2.19
HOXC9-201ENST00000303450 CASTP20810 708 aaKnown RBP28.75■■■□□ 2.19
HOXC9-201ENST00000303450 TMEM67Q5HYA8 995 aa28.75■■■□□ 2.19
HOXC9-201ENST00000303450 IFIT1BQ5T764 474 aaKnown RBP28.75■■■□□ 2.19
HOXC9-201ENST00000303450 SPICE1Q8N0Z3 855 aa28.75■■■□□ 2.19
HOXC9-201ENST00000303450 LPAR1Q92633 364 aa28.75■■■□□ 2.19
HOXC9-201ENST00000303450 MTA3Q9BTC8 594 aa28.75■■■□□ 2.19
HOXC9-201ENST00000303450 C22orf23Q9BZE7 217 aa28.75■■■□□ 2.19
HOXC9-201ENST00000303450 AGTPBP1Q9UPW5 1226 aa28.75■■■□□ 2.19
HOXC9-201ENST00000303450 LOC285556D6RIA3 1793 aa28.75■■■□□ 2.19
HOXC9-201ENST00000303450 F5H6K3 240 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 IGF2BP3O00425 579 aaKnown RBP eCLIP28.74■■■□□ 2.19
HOXC9-201ENST00000303450 KLRC3Q07444 240 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 TREML2Q5T2D2 321 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 ANKRD23Q86SG2 305 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 ANKS1AQ92625 1134 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 TMEM87BQ96K49 555 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 VCAM1P19320 739 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 WTAPQ15007 396 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 SEC23AQ15436 765 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 GPAT2Q6NUI2 795 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 FAM43AQ8N2R8 423 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 GMCL1P1Q8NEA9 526 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 KAT14Q9H8E8 782 aa28.74■■■□□ 2.19
HOXC9-201ENST00000303450 WDR19Q8NEZ3 1342 aa28.73■■■□□ 2.19
HOXC9-201ENST00000303450 CPA1P15085 419 aa28.73■■■□□ 2.19
HOXC9-201ENST00000303450 MAP2K1Q02750 393 aaPredicted RBP28.73■■■□□ 2.19
HOXC9-201ENST00000303450 PABPC4Q13310 644 aaKnown RBP eCLIP28.73■■■□□ 2.19
HOXC9-201ENST00000303450 KIAA1755Q5JYT7 1200 aa28.73■■■□□ 2.19
HOXC9-201ENST00000303450 IGDCC4Q8TDY8 1250 aa28.73■■■□□ 2.19
HOXC9-201ENST00000303450 TM6SF1Q9BZW5 370 aa28.73■■■□□ 2.19
HOXC9-201ENST00000303450 NDUFB10O96000 172 aa28.72■■■□□ 2.19
HOXC9-201ENST00000303450 EXOSC10Q01780 885 aaKnown RBP28.72■■■□□ 2.19
HOXC9-201ENST00000303450 SLFN13Q68D06 897 aa28.72■■■□□ 2.19
HOXC9-201ENST00000303450 TCEANC2Q96MN5 208 aa28.72■■■□□ 2.19
HOXC9-201ENST00000303450 LRRC2Q9BYS8 371 aa28.72■■■□□ 2.19
HOXC9-201ENST00000303450 PDHXO00330 501 aa28.71■■■□□ 2.19
HOXC9-201ENST00000303450 ALDH1A1P00352 501 aa28.71■■■□□ 2.19
HOXC9-201ENST00000303450 ZSWIM6Q9HCJ5 1215 aa28.71■■■□□ 2.19
HOXC9-201ENST00000303450 ZCCHC17Q9NP64 241 aaKnown RBP28.71■■■□□ 2.19
HOXC9-201ENST00000303450 MTMR7Q9Y216 660 aa28.71■■■□□ 2.19
HOXC9-201ENST00000303450 CYP46A1Q9Y6A2 500 aa28.71■■■□□ 2.19
HOXC9-201ENST00000303450 WDR46O15213 610 aaKnown RBP28.7■■■□□ 2.19
HOXC9-201ENST00000303450 RPS6KB1P23443 525 aa28.7■■■□□ 2.19
HOXC9-201ENST00000303450 RUFY3Q7L099 469 aa28.7■■■□□ 2.19
HOXC9-201ENST00000303450 PNMA1Q8ND90 353 aa28.7■■■□□ 2.19
HOXC9-201ENST00000303450 RPAP3Q9H6T3 665 aaPredicted RBP28.7■■■□□ 2.19
HOXC9-201ENST00000303450 SLC45A1Q9Y2W3 748 aa28.7■■■□□ 2.19
HOXC9-201ENST00000303450 SH2B2O14492 632 aaPredicted RBP28.69■■■□□ 2.18
HOXC9-201ENST00000303450 FGD1P98174 961 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 TMTC2Q8N394 836 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 CHMP4CQ96CF2 233 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 BEGAINQ9BUH8 593 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 LY9Q9HBG7 655 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L15C9J2P7 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L13C9JLJ4 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L11C9JVI0 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L18D6R9N7 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L22D6RA61 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L17D6RBQ6 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L19D6RCP7 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L20D6RJB6 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 HOXA7P31268 230 aaPredicted RBP28.69■■■□□ 2.18
HOXC9-201ENST00000303450 USP17L24Q0WX57 530 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 IL17RAQ96F46 866 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 UPF3BQ9BZI7 483 aaKnown RBP28.69■■■□□ 2.18
HOXC9-201ENST00000303450 TANGO6Q9C0B7 1094 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 GPHNQ9NQX3 736 aaPredicted RBP28.69■■■□□ 2.18
HOXC9-201ENST00000303450 PNMA3Q9UL41 463 aa28.69■■■□□ 2.18
HOXC9-201ENST00000303450 OSBPP22059 807 aa28.68■■■□□ 2.18
HOXC9-201ENST00000303450 LIFRP42702 1097 aa28.68■■■□□ 2.18
HOXC9-201ENST00000303450 SLC1A4P43007 532 aa28.68■■■□□ 2.18
HOXC9-201ENST00000303450 RBM25P49756 843 aaKnown RBP28.68■■■□□ 2.18
HOXC9-201ENST00000303450 FAM83BQ5T0W9 1011 aa28.68■■■□□ 2.18
HOXC9-201ENST00000303450 NFXL1Q6ZNB6 911 aa28.68■■■□□ 2.18
HOXC9-201ENST00000303450 JMYQ8N9B5 988 aa28.68■■■□□ 2.18
HOXC9-201ENST00000303450 GMCL1Q96IK5 515 aa28.68■■■□□ 2.18
HOXC9-201ENST00000303450 NUP88Q99567 741 aaPredicted RBP28.68■■■□□ 2.18
HOXC9-201ENST00000303450 SENP2Q9HC62 589 aa28.68■■■□□ 2.18
HOXC9-201ENST00000303450 ISY1Q9ULR0 285 aaKnown RBP28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms