RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 STX8Q9UNK0 236 aa15.05■□□□□ -0
SS18-202ENST00000269138 CA12O43570 354 aa15.04■□□□□ -0
SS18-202ENST00000269138 RAD21O60216 631 aa15.04■□□□□ -0
SS18-202ENST00000269138 HSPA4P34932 840 aa15.04■□□□□ -0
SS18-202ENST00000269138 TRDNQ13061 729 aa15.04■□□□□ -0
SS18-202ENST00000269138 RNF20Q5VTR2 975 aa15.04■□□□□ -0
SS18-202ENST00000269138 CHST3Q7LGC8 479 aa15.04■□□□□ -0
SS18-202ENST00000269138 MB21D2Q8IYB1 491 aaPredicted RBP15.04■□□□□ -0
SS18-202ENST00000269138 NCOA7Q8NI08 942 aa15.04■□□□□ -0
SS18-202ENST00000269138 KCNB2Q92953 911 aa15.04■□□□□ -0
SS18-202ENST00000269138 SH2D4AQ9H788 454 aa15.04■□□□□ -0
SS18-202ENST00000269138 ZCCHC17Q9NP64 241 aaKnown RBP15.04■□□□□ -0
SS18-202ENST00000269138 SAGE1Q9NXZ1 904 aa15.04■□□□□ -0
SS18-202ENST00000269138 F5H6K3 240 aa15.03■□□□□ -0
SS18-202ENST00000269138 NDUFB10O96000 172 aa15.03■□□□□ -0
SS18-202ENST00000269138 ANTXR2P58335 489 aa15.03■□□□□ -0
SS18-202ENST00000269138 KLRC3Q07444 240 aa15.03■□□□□ -0
SS18-202ENST00000269138 ADCK5Q3MIX3 580 aa15.03■□□□□ -0
SS18-202ENST00000269138 RALYLQ86SE5 291 aaKnown RBP15.03■□□□□ -0
SS18-202ENST00000269138 ZSCAN10Q96SZ4 725 aaPredicted RBP15.03■□□□□ -0
SS18-202ENST00000269138 NUP88Q99567 741 aaPredicted RBP15.03■□□□□ -0
SS18-202ENST00000269138 TMEM47Q9BQJ4 181 aa15.03■□□□□ -0
SS18-202ENST00000269138 ASCC2Q9H1I8 757 aaPredicted RBP15.03■□□□□ -0
SS18-202ENST00000269138 RPAP3Q9H6T3 665 aaPredicted RBP15.03■□□□□ -0
SS18-202ENST00000269138 HSPA8P11142 646 aaKnown RBP15.02■□□□□ -0
SS18-202ENST00000269138 HOXA7P31268 230 aaPredicted RBP15.02■□□□□ -0
SS18-202ENST00000269138 TSGA10IPQ3SY00 556 aa15.02■□□□□ -0
SS18-202ENST00000269138 RASGRP2Q7LDG7 609 aa15.02■□□□□ -0
SS18-202ENST00000269138 IQCA1Q86XH1 822 aa15.02■□□□□ -0
SS18-202ENST00000269138 ENAHQ8N8S7 591 aaPredicted RBP15.02■□□□□ -0
SS18-202ENST00000269138 P2RX7Q99572 595 aaKnown RBP15.02■□□□□ -0
SS18-202ENST00000269138 CFHR5Q9BXR6 569 aa15.02■□□□□ -0
SS18-202ENST00000269138 ZFYVE28Q9HCC9 887 aa15.02■□□□□ -0
SS18-202ENST00000269138 GOPCQ9HD26 462 aa15.02■□□□□ -0
SS18-202ENST00000269138 SLC45A1Q9Y2W3 748 aa15.02■□□□□ -0
SS18-202ENST00000269138 SNX14Q9Y5W7 946 aa15.02■□□□□ -0
SS18-202ENST00000269138 LOC285556D6RIA3 1793 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L15C9J2P7 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L13C9JLJ4 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L11C9JVI0 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L18D6R9N7 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L22D6RA61 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L17D6RBQ6 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L19D6RCP7 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L20D6RJB6 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 TOP1P11387 765 aaKnown RBP15.02□□□□□ -0.01
SS18-202ENST00000269138 NT5C2P49902 561 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 USP17L24Q0WX57 530 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 SLFN13Q68D06 897 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 CATSPERGQ6ZRH7 1159 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 LPAR1Q92633 364 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 UBAC1Q9BSL1 405 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 SENP2Q9HC62 589 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 GPHNQ9NQX3 736 aaPredicted RBP15.02□□□□□ -0.01
SS18-202ENST00000269138 MTMR7Q9Y216 660 aa15.02□□□□□ -0.01
SS18-202ENST00000269138 TNKSO95271 1327 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 ADGRA2Q96PE1 1338 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 EPB41L2O43491 1005 aaKnown RBP15.01□□□□□ -0.01
SS18-202ENST00000269138 PEX10O60683 326 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 ZKSCAN1P17029 563 aaPredicted RBP15.01□□□□□ -0.01
SS18-202ENST00000269138 OSBPP22059 807 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 LBX1P52954 281 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 IRX3P78415 501 aaPredicted RBP15.01□□□□□ -0.01
SS18-202ENST00000269138 PABPC4Q13310 644 aaKnown RBP eCLIP15.01□□□□□ -0.01
SS18-202ENST00000269138 SEC23AQ15436 765 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 PPP4R3BQ5MIZ7 849 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 FAM83BQ5T0W9 1011 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 POTEEQ6S8J3 1075 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 DGKHQ86XP1 1220 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 GMCL1P1Q8NEA9 526 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 ANKS1AQ92625 1134 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 TTC14Q96N46 770 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 PARK7Q99497 189 aaKnown RBP15.01□□□□□ -0.01
SS18-202ENST00000269138 TANGO6Q9C0B7 1094 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 CPA4Q9UI42 421 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 SYNPO2Q9UMS6 1093 aa15.01□□□□□ -0.01
SS18-202ENST00000269138 GPR25O00155 361 aa15□□□□□ -0.01
SS18-202ENST00000269138 IFIT3O14879 490 aaKnown RBP15□□□□□ -0.01
SS18-202ENST00000269138 WDR46O15213 610 aaKnown RBP15□□□□□ -0.01
SS18-202ENST00000269138 PRC1O43663 620 aa15□□□□□ -0.01
SS18-202ENST00000269138 TLR2O60603 784 aa15□□□□□ -0.01
SS18-202ENST00000269138 CPA1P15085 419 aa15□□□□□ -0.01
SS18-202ENST00000269138 MCCP23508 829 aa15□□□□□ -0.01
SS18-202ENST00000269138 CTCFP49711 727 aaPredicted RBP15□□□□□ -0.01
SS18-202ENST00000269138 CCDC178Q5BJE1 867 aa15□□□□□ -0.01
SS18-202ENST00000269138 NEK1Q96PY6 1258 aa15□□□□□ -0.01
SS18-202ENST00000269138 LRRC2Q9BYS8 371 aa15□□□□□ -0.01
SS18-202ENST00000269138 FBXO28Q9NVF7 368 aa15□□□□□ -0.01
SS18-202ENST00000269138 PNMA3Q9UL41 463 aa15□□□□□ -0.01
SS18-202ENST00000269138 MCM5P33992 734 aa14.99□□□□□ -0.01
SS18-202ENST00000269138 HERVK_113P62684 666 aa14.99□□□□□ -0.01
SS18-202ENST00000269138 SAMD1Q6SPF0 538 aaPredicted RBP14.99□□□□□ -0.01
SS18-202ENST00000269138 C17orf99Q6UX52 265 aa14.99□□□□□ -0.01
SS18-202ENST00000269138 IGDCC4Q8TDY8 1250 aa14.99□□□□□ -0.01
SS18-202ENST00000269138 SMCR8Q8TEV9 937 aaPredicted RBP14.99□□□□□ -0.01
SS18-202ENST00000269138 TCEANC2Q96MN5 208 aa14.99□□□□□ -0.01
SS18-202ENST00000269138 JAKMIP1Q96N16 626 aaKnown RBP14.99□□□□□ -0.01
SS18-202ENST00000269138 KRT32Q14532 448 aa14.98□□□□□ -0.01
SS18-202ENST00000269138 TMEM67Q5HYA8 995 aa14.98□□□□□ -0.01
SS18-202ENST00000269138 KAT14Q9H8E8 782 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms