RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ERFEQ4G0M1 354 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 NCAPH2Q6IBW4 605 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 REXO2Q9Y3B8 237 aaKnown RBP12.18□□□□□ -0.46
USP28-201ENST00000003302 CDKL5O76039 1030 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 CAMTA2O94983 1202 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 RSRC2Q7L4I2 434 aaKnown RBP12.18□□□□□ -0.46
USP28-201ENST00000003302 IRF2BP1Q8IU81 584 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 MNS1Q8NEH6 495 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 DYNLL2Q96FJ2 89 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 DUSP10Q9Y6W6 482 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 ZMYND10O75800 440 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 NTSR2O95665 410 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 CAPN2P17655 700 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 PBX1P40424 430 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 HNRNPH2P55795 449 aaKnown RBP12.18□□□□□ -0.46
USP28-201ENST00000003302 LRRFIP1Q32MZ4 808 aaKnown RBP12.18□□□□□ -0.46
USP28-201ENST00000003302 FOXR1Q6PIV2 292 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 ENOX1Q8TC92 643 aaKnown RBP12.18□□□□□ -0.46
USP28-201ENST00000003302 PHF20Q9BVI0 1012 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 LCMT1Q9UIC8 334 aa12.18□□□□□ -0.46
USP28-201ENST00000003302 ANKRD65E5RJM6 399 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 RHOXF2BP0C7M4 288 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 ALX1Q15699 326 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 RHOXF2Q9BQY4 288 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 FUT8Q9BYC5 575 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 FBXO3Q9UK99 471 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 CTR9Q6PD62 1173 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 SLC35F6Q8N357 371 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 TMEM60Q9H2L4 133 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 ANKRD36CQ5JPF3 1778 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 DEXIO95424 95 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 ADAMTS2O95450 1211 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 ATP6V1AP38606 617 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 SH3RF1Q7Z6J0 888 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 JMYQ8N9B5 988 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 UBAC1Q9BSL1 405 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 FOXP1Q9H334 677 aaPredicted RBP12.17□□□□□ -0.46
USP28-201ENST00000003302 RCCD1A6NED2 376 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 VGLL3A8MV65 326 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 PHACTR2O75167 634 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 SLC5A1P13866 664 aa12.17□□□□□ -0.46
USP28-201ENST00000003302 OAS2P29728 719 aaKnown RBP12.17□□□□□ -0.46
USP28-201ENST00000003302 CPLX2Q6PUV4 134 aaKnown RBP12.17□□□□□ -0.46
USP28-201ENST00000003302 SYNRGQ9UMZ2 1314 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 USP17L8P0C7I0 530 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 KRT31Q15323 416 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 E2F4Q16254 413 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 GSPT2Q8IYD1 628 aaKnown RBP12.16□□□□□ -0.46
USP28-201ENST00000003302 SLF1Q9BQI6 1058 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 NOL10Q9BSC4 688 aaKnown RBP12.16□□□□□ -0.46
USP28-201ENST00000003302 PLEKHA4Q9H4M7 779 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 PLCD1P51178 756 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 RILPL1Q5EBL4 403 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 ZNF569Q5MCW4 686 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 CDKAL1Q5VV42 579 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 GOLGA8HP0CJ92 632 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 CASQ1P31415 396 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 GABPB1Q06547 395 aaPredicted RBP12.16□□□□□ -0.46
USP28-201ENST00000003302 MCM6Q14566 821 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 RCSD1Q6JBY9 416 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 FAM84BQ96KN1 310 aaPredicted RBP12.16□□□□□ -0.46
USP28-201ENST00000003302 MYH10P35580 1976 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 LRP5O75197 1615 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 STK36Q9NRP7 1315 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 ARHGAP25P42331 645 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 NAALADL2Q58DX5 795 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 TRIM22Q8IYM9 498 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 ZSCAN10Q96SZ4 725 aaPredicted RBP12.16□□□□□ -0.46
USP28-201ENST00000003302 UBXN6Q9BZV1 441 aa12.16□□□□□ -0.46
USP28-201ENST00000003302 CNTNAP5Q8WYK1 1306 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 STX10O60499 249 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 KCNJ6P48051 423 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 MROH5Q6ZUA9 1318 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 VSNL1P62760 191 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 TPM4P67936 248 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 FKBP15Q5T1M5 1219 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 RIN2Q8WYP3 895 aaPredicted RBP12.15□□□□□ -0.46
USP28-201ENST00000003302 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.15□□□□□ -0.46
USP28-201ENST00000003302 USP17L3A6NCW0 530 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 USP17L4A6NCW7 530 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 TRIM75PA6NK02 468 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 USP17L1Q7RTZ2 530 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 MARCH10Q8NA82 808 aaPredicted RBP12.15□□□□□ -0.46
USP28-201ENST00000003302 RGS22Q8NE09 1264 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 GJA10Q969M2 543 aa12.15□□□□□ -0.46
USP28-201ENST00000003302 DISP2A7MBM2 1401 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 UQCRFS1P1P0C7P4 283 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 CYP2C19P33261 490 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 PRCPP42785 496 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 IFIT1BQ5T764 474 aaKnown RBP12.14□□□□□ -0.47
USP28-201ENST00000003302 TMCO3Q6UWJ1 677 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 IL17RBQ9NRM6 502 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 BRCA2P51587 3418 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 MAGEB6P1A0A0J9YX57 407 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 FAM170AA1A519 330 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 EFCAB8A8MWE9 144 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 CYTH3O43739 400 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 MFAP3LO75121 409 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 PDXDC2PQ6P474 469 aa12.14□□□□□ -0.47
USP28-201ENST00000003302 POLD4Q9HCU8 107 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms