RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ALDH1L2Q3SY69 923 aa20.16■□□□□ 0.82
CLN3-264ENST00000637985 SSH1Q8WYL5 1049 aa20.16■□□□□ 0.82
CLN3-264ENST00000637985 ZNF576Q9H609 170 aa20.16■□□□□ 0.82
CLN3-264ENST00000637985 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.15■□□□□ 0.82
CLN3-264ENST00000637985 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.15■□□□□ 0.82
CLN3-264ENST00000637985 WDR78Q5VTH9 848 aa20.15■□□□□ 0.82
CLN3-264ENST00000637985 USP17L2Q6R6M4 530 aa20.15■□□□□ 0.82
CLN3-264ENST00000637985 TEX11Q8IYF3 940 aa20.15■□□□□ 0.82
CLN3-264ENST00000637985 CDCA7LQ96GN5 454 aa20.15■□□□□ 0.82
CLN3-264ENST00000637985 ZBTB21Q9ULJ3 1066 aa20.15■□□□□ 0.82
CLN3-264ENST00000637985 TACC3Q9Y6A5 838 aa20.15■□□□□ 0.82
CLN3-264ENST00000637985 CT47B1P0C2W7 299 aaPredicted RBP20.14■□□□□ 0.81
CLN3-264ENST00000637985 ADCYAP1R1P41586 468 aa20.14■□□□□ 0.81
CLN3-264ENST00000637985 TLE2Q04725 743 aa20.14■□□□□ 0.81
CLN3-264ENST00000637985 FOXP4Q8IVH2 680 aaPredicted RBP20.14■□□□□ 0.81
CLN3-264ENST00000637985 C12orf42Q96LP6 360 aa20.14■□□□□ 0.81
CLN3-264ENST00000637985 THEGQ9P2T0 379 aa20.14■□□□□ 0.81
CLN3-264ENST00000637985 IVNS1ABPQ9Y6Y0 642 aa20.14■□□□□ 0.81
CLN3-264ENST00000637985 USP17L15C9J2P7 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 USP17L13C9JLJ4 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 USP17L11C9JVI0 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 USP17L18D6R9N7 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 USP17L22D6RA61 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 USP17L17D6RBQ6 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 USP17L19D6RCP7 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 USP17L20D6RJB6 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 SEPT4O43236 478 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 GDF11O95390 407 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 USP17L24Q0WX57 530 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 AKNAD1Q5T1N1 836 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 ANO1Q5XXA6 986 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 OLFML2BQ68BL8 750 aa20.13■□□□□ 0.81
CLN3-264ENST00000637985 SH3RF3Q8TEJ3 882 aaPredicted RBP20.13■□□□□ 0.81
CLN3-264ENST00000637985 UHRF1Q96T88 793 aaPredicted RBP20.13■□□□□ 0.81
CLN3-264ENST00000637985 MYO9BQ13459 2157 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 KIAA0355O15063 1070 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 LBX2Q6XYB7 198 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 TBC1D9Q6ZT07 1266 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 FERMT2Q96AC1 680 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 TIFAQ96CG3 184 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 XAGE2Q96GT9 111 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 HMG20BQ9P0W2 317 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 BTBD7Q9P203 1132 aa20.12■□□□□ 0.81
CLN3-264ENST00000637985 PA2G4Q9UQ80 394 aaKnown RBP20.12■□□□□ 0.81
CLN3-264ENST00000637985 MYCNP04198 464 aaPredicted RBP20.11■□□□□ 0.81
CLN3-264ENST00000637985 CLTBP09497 229 aa20.11■□□□□ 0.81
CLN3-264ENST00000637985 MRPS5P82675 430 aaKnown RBP20.11■□□□□ 0.81
CLN3-264ENST00000637985 LRRC41Q15345 812 aa20.11■□□□□ 0.81
CLN3-264ENST00000637985 CATSPERGQ6ZRH7 1159 aa20.11■□□□□ 0.81
CLN3-264ENST00000637985 PPM1EQ8WY54 764 aa20.11■□□□□ 0.81
CLN3-264ENST00000637985 COPRSQ9NQ92 184 aa20.11■□□□□ 0.81
CLN3-264ENST00000637985 A0A1B0GUL7 405 aa20.1■□□□□ 0.81
CLN3-264ENST00000637985 FPGSQ05932 587 aa20.1■□□□□ 0.81
CLN3-264ENST00000637985 MVPQ14764 893 aaKnown RBP20.1■□□□□ 0.81
CLN3-264ENST00000637985 SPATA5Q8NB90 893 aa20.1■□□□□ 0.81
CLN3-264ENST00000637985 GAS2L1Q99501 681 aaPredicted RBP20.1■□□□□ 0.81
CLN3-264ENST00000637985 SMC4Q9NTJ3 1288 aa20.1■□□□□ 0.81
CLN3-264ENST00000637985 RAI14Q9P0K7 980 aa20.1■□□□□ 0.81
CLN3-264ENST00000637985 CHD9Q3L8U1 2897 aa20.09■□□□□ 0.81
CLN3-264ENST00000637985 SYNGAP1Q96PV0 1343 aa20.09■□□□□ 0.81
CLN3-264ENST00000637985 RAG1P15918 1043 aa20.09■□□□□ 0.81
CLN3-264ENST00000637985 PI16Q6UXB8 463 aa20.09■□□□□ 0.81
CLN3-264ENST00000637985 DPP9Q86TI2 863 aa20.09■□□□□ 0.81
CLN3-264ENST00000637985 CRACR2BQ8N4Y2 399 aaPredicted RBP20.09■□□□□ 0.81
CLN3-264ENST00000637985 PHF24Q9UPV7 400 aa20.09■□□□□ 0.81
CLN3-264ENST00000637985 ARIH1Q9Y4X5 557 aaPredicted RBP20.09■□□□□ 0.81
CLN3-264ENST00000637985 TGFBRAP1Q8WUH2 860 aa20.08■□□□□ 0.81
CLN3-264ENST00000637985 C1QTNF1Q9BXJ1 281 aa20.08■□□□□ 0.81
CLN3-264ENST00000637985 TRIM34Q9BYJ4 488 aa20.08■□□□□ 0.81
CLN3-264ENST00000637985 PALD1Q9ULE6 856 aa20.08■□□□□ 0.81
CLN3-264ENST00000637985 ZNF236Q9UL36 1845 aa20.08■□□□□ 0.8
CLN3-264ENST00000637985 FLT1P17948 1338 aa20.07■□□□□ 0.8
CLN3-264ENST00000637985 STRNO43815 780 aa20.07■□□□□ 0.8
CLN3-264ENST00000637985 GH2P01242 217 aa20.07■□□□□ 0.8
CLN3-264ENST00000637985 UBTFL1P0CB47 393 aaPredicted RBP20.07■□□□□ 0.8
CLN3-264ENST00000637985 ADORA2AP29274 412 aa20.07■□□□□ 0.8
CLN3-264ENST00000637985 ZYXQ15942 572 aaKnown RBP20.07■□□□□ 0.8
CLN3-264ENST00000637985 FAM47AQ5JRC9 791 aa20.07■□□□□ 0.8
CLN3-264ENST00000637985 MAPKAPK5Q8IW41 473 aa20.07■□□□□ 0.8
CLN3-264ENST00000637985 AKAP2Q9Y2D5 859 aa20.07■□□□□ 0.8
CLN3-264ENST00000637985 CDK5RAP2Q96SN8 1893 aa20.07■□□□□ 0.8
CLN3-264ENST00000637985 SPDYE16A6NNV3 312 aaPredicted RBP20.06■□□□□ 0.8
CLN3-264ENST00000637985 BAG3O95817 575 aa20.06■□□□□ 0.8
CLN3-264ENST00000637985 VCAM1P19320 739 aa20.06■□□□□ 0.8
CLN3-264ENST00000637985 PPP4CP60510 307 aa20.06■□□□□ 0.8
CLN3-264ENST00000637985 PRAMEF19Q5SWL8 479 aa20.06■□□□□ 0.8
CLN3-264ENST00000637985 FEZ1Q99689 392 aa20.06■□□□□ 0.8
CLN3-264ENST00000637985 NOL10Q9BSC4 688 aaKnown RBP20.06■□□□□ 0.8
CLN3-264ENST00000637985 KIAA1683Q9H0B3 1180 aa20.06■□□□□ 0.8
CLN3-264ENST00000637985 PRDM12Q9H4Q4 367 aa20.06■□□□□ 0.8
CLN3-264ENST00000637985 AATFQ9NY61 560 aaKnown RBP eCLIP20.06■□□□□ 0.8
CLN3-264ENST00000637985 SMCHD1A6NHR9 2005 aa20.05■□□□□ 0.8
CLN3-264ENST00000637985 XIRP2A4UGR9 3374 aa20.05■□□□□ 0.8
CLN3-264ENST00000637985 FOCADQ5VW36 1801 aa20.05■□□□□ 0.8
CLN3-264ENST00000637985 COBLO75128 1261 aa20.05■□□□□ 0.8
CLN3-264ENST00000637985 PLCG2P16885 1265 aa20.05■□□□□ 0.8
CLN3-264ENST00000637985 USP14P54578 494 aa20.05■□□□□ 0.8
CLN3-264ENST00000637985 ADGRE1Q14246 886 aa20.05■□□□□ 0.8
CLN3-264ENST00000637985 MOV10L1Q9BXT6 1211 aaKnown RBP20.05■□□□□ 0.8
CLN3-264ENST00000637985 PBX4Q9BYU1 374 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms