RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 KIF4BQ2VIQ3 1234 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 FAM184AQ8NB25 1140 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 KAT14Q9H8E8 782 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 MTMR6Q9Y217 621 aa21.5■■□□□ 1.03
CLN3-254ENST00000637050 ZSCAN22P10073 491 aaPredicted RBP21.49■■□□□ 1.03
CLN3-254ENST00000637050 TBC1D10BQ4KMP7 808 aaPredicted RBP21.49■■□□□ 1.03
CLN3-254ENST00000637050 C9orf131Q5VYM1 1079 aa21.49■■□□□ 1.03
CLN3-254ENST00000637050 CEP95Q96GE4 821 aa21.49■■□□□ 1.03
CLN3-254ENST00000637050 TRIM34Q9BYJ4 488 aa21.49■■□□□ 1.03
CLN3-254ENST00000637050 PGAP2Q9UHJ9 254 aa21.49■■□□□ 1.03
CLN3-254ENST00000637050 HERC5Q9UII4 1024 aaKnown RBP21.49■■□□□ 1.03
CLN3-254ENST00000637050 GREB1LQ9C091 1923 aaPredicted RBP21.49■■□□□ 1.03
CLN3-254ENST00000637050 FAM196BA6NMK8 535 aa21.48■■□□□ 1.03
CLN3-254ENST00000637050 IFNAR1P17181 557 aa21.48■■□□□ 1.03
CLN3-254ENST00000637050 PNMA1Q8ND90 353 aa21.48■■□□□ 1.03
CLN3-254ENST00000637050 TMEM47Q9BQJ4 181 aa21.48■■□□□ 1.03
CLN3-254ENST00000637050 STX8Q9UNK0 236 aa21.48■■□□□ 1.03
CLN3-254ENST00000637050 TNNI2P48788 182 aa21.47■■□□□ 1.03
CLN3-254ENST00000637050 GPR162Q16538 588 aa21.47■■□□□ 1.03
CLN3-254ENST00000637050 MAP3K14Q99558 947 aa21.47■■□□□ 1.03
CLN3-254ENST00000637050 TMEM39BQ9GZU3 492 aa21.47■■□□□ 1.03
CLN3-254ENST00000637050 RBM28Q9NW13 759 aaKnown RBP21.47■■□□□ 1.03
CLN3-254ENST00000637050 MTMR4Q9NYA4 1195 aa21.47■■□□□ 1.03
CLN3-254ENST00000637050 ORC3Q9UBD5 711 aaPredicted RBP21.47■■□□□ 1.03
CLN3-254ENST00000637050 PPFIA3O75145 1194 aa21.47■■□□□ 1.03
CLN3-254ENST00000637050 TNFAIP1Q13829 316 aa21.47■■□□□ 1.03
CLN3-254ENST00000637050 CERKLQ49MI3 558 aaPredicted RBP21.47■■□□□ 1.03
CLN3-254ENST00000637050 FOXD4L5Q5VV16 416 aaPredicted RBP21.47■■□□□ 1.03
CLN3-254ENST00000637050 FOXD4L4Q8WXT5 416 aaPredicted RBP21.47■■□□□ 1.03
CLN3-254ENST00000637050 STK36Q9NRP7 1315 aa21.46■■□□□ 1.03
CLN3-254ENST00000637050 DDNO94850 711 aaPredicted RBP21.46■■□□□ 1.03
CLN3-254ENST00000637050 GBP4Q96PP9 640 aa21.46■■□□□ 1.03
CLN3-254ENST00000637050 VPS37CA5D8V6 355 aaPredicted RBP21.45■■□□□ 1.02
CLN3-254ENST00000637050 TBC1D12O60347 775 aa21.45■■□□□ 1.02
CLN3-254ENST00000637050 FMNL1O95466 1100 aaPredicted RBP21.45■■□□□ 1.02
CLN3-254ENST00000637050 F13A1P00488 732 aa21.45■■□□□ 1.02
CLN3-254ENST00000637050 TOP1P11387 765 aaKnown RBP21.45■■□□□ 1.02
CLN3-254ENST00000637050 RASA3Q14644 834 aa21.45■■□□□ 1.02
CLN3-254ENST00000637050 NBPF11Q86T75 865 aa21.45■■□□□ 1.02
CLN3-254ENST00000637050 PHKBQ93100 1093 aa21.45■■□□□ 1.02
CLN3-254ENST00000637050 HACL1Q9UJ83 578 aa21.45■■□□□ 1.02
CLN3-254ENST00000637050 ASTN2O75129 1339 aaPredicted RBP21.45■■□□□ 1.02
CLN3-254ENST00000637050 GRIN3BO60391 1043 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 EPS15P42566 896 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 FUT2Q10981 343 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 CDC37L1Q7L3B6 337 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 CTCFLQ8NI51 663 aaPredicted RBP21.44■■□□□ 1.02
CLN3-254ENST00000637050 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.44■■□□□ 1.02
CLN3-254ENST00000637050 SOCS7O14512 581 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 BAG4O95429 457 aaKnown RBP21.44■■□□□ 1.02
CLN3-254ENST00000637050 MAP3K10Q02779 954 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 SSRP1Q08945 709 aaKnown RBP21.44■■□□□ 1.02
CLN3-254ENST00000637050 PPP4R3BQ5MIZ7 849 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 CDAN1Q8IWY9 1227 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 RGS22Q8NE09 1264 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 TRPM4Q8TD43 1214 aa21.44■■□□□ 1.02
CLN3-254ENST00000637050 MPHOSPH10O00566 681 aaKnown RBP21.43■■□□□ 1.02
CLN3-254ENST00000637050 TTLL1O95922 423 aa21.43■■□□□ 1.02
CLN3-254ENST00000637050 KIF5BP33176 963 aa21.43■■□□□ 1.02
CLN3-254ENST00000637050 MCM4P33991 863 aa21.43■■□□□ 1.02
CLN3-254ENST00000637050 GRM4Q14833 912 aa21.43■■□□□ 1.02
CLN3-254ENST00000637050 TMTC3Q6ZXV5 915 aa21.43■■□□□ 1.02
CLN3-254ENST00000637050 TEPSINQ96N21 525 aa21.43■■□□□ 1.02
CLN3-254ENST00000637050 SLC26A6Q9BXS9 759 aa21.43■■□□□ 1.02
CLN3-254ENST00000637050 H3BQV1 296 aa21.42■■□□□ 1.02
CLN3-254ENST00000637050 PLEKHA8P1O95397 391 aa21.42■■□□□ 1.02
CLN3-254ENST00000637050 ABCB5Q2M3G0 1257 aa21.42■■□□□ 1.02
CLN3-254ENST00000637050 IFFO2Q5TF58 517 aa21.42■■□□□ 1.02
CLN3-254ENST00000637050 TMEM179Q6ZVK1 233 aa21.42■■□□□ 1.02
CLN3-254ENST00000637050 TRIM22Q8IYM9 498 aa21.42■■□□□ 1.02
CLN3-254ENST00000637050 RRP1BQ14684 758 aaKnown RBP21.41■■□□□ 1.02
CLN3-254ENST00000637050 CLEC10AQ8IUN9 316 aa21.41■■□□□ 1.02
CLN3-254ENST00000637050 CMTR1Q8N1G2 835 aaKnown RBP21.41■■□□□ 1.02
CLN3-254ENST00000637050 RNF26Q9BY78 433 aaPredicted RBP21.41■■□□□ 1.02
CLN3-254ENST00000637050 KANSL2Q9H9L4 492 aa21.41■■□□□ 1.02
CLN3-254ENST00000637050 ZC3H4Q9UPT8 1303 aaKnown RBP21.41■■□□□ 1.02
CLN3-254ENST00000637050 GUCY1A2P33402 732 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 HIRAP54198 1017 aaPredicted RBP21.4■■□□□ 1.02
CLN3-254ENST00000637050 SHROOM1Q2M3G4 852 aaPredicted RBP21.4■■□□□ 1.02
CLN3-254ENST00000637050 APOBEC3FQ8IUX4 373 aaKnown RBP21.4■■□□□ 1.02
CLN3-254ENST00000637050 C8orf76Q96K31 380 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 NYAP2Q9P242 653 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 CLIP2Q9UDT6 1046 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 MAD2L2Q9UI95 211 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 SCAF8Q9UPN6 1271 aaKnown RBP21.4■■□□□ 1.02
CLN3-254ENST00000637050 LMOD1P29536 600 aaPredicted RBP21.4■■□□□ 1.02
CLN3-254ENST00000637050 ANGEL2Q5VTE6 544 aaKnown RBP21.4■■□□□ 1.02
CLN3-254ENST00000637050 DPY19L2Q6NUT2 758 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 CCDC82Q8N4S0 544 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 SRBD1Q8N5C6 995 aaKnown RBP21.4■■□□□ 1.02
CLN3-254ENST00000637050 FBXO18Q8NFZ0 1043 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 WASF1Q92558 559 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 ALG1Q9BT22 464 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 DEFB129Q9H1M3 183 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 ATP6V1DQ9Y5K8 247 aa21.4■■□□□ 1.02
CLN3-254ENST00000637050 PALM3A6NDB9 673 aaPredicted RBP21.39■■□□□ 1.01
CLN3-254ENST00000637050 PRPF3O43395 683 aaKnown RBP21.39■■□□□ 1.01
CLN3-254ENST00000637050 GDF11O95390 407 aa21.39■■□□□ 1.01
CLN3-254ENST00000637050 DEXIO95424 95 aa21.39■■□□□ 1.01
CLN3-254ENST00000637050 GNAQP50148 359 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms