RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 EGR3Q06889 387 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 ZNF746Q6NUN9 644 aaPredicted RBP2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 CDH24Q86UP0 819 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 SIRT2Q8IXJ6 389 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 PDZD8Q8NEN9 1154 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 PLPPR2Q96GM1 343 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 NECAB3Q96P71 396 aaPredicted RBP2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 FAM129BQ96TA1 746 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 SP110Q9HB58 689 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 CACNA2D2Q9NY47 1150 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 YBX2Q9Y2T7 364 aaKnown RBP2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 SAMM50Q9Y512 469 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 IRAK3Q9Y616 596 aa2.3□□□□□ -2.04
SMARCB1-209ENST00000635578 FITM1A5D6W6 292 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 SLC22A31A6NKX4 558 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 ENC1O14682 589 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 ZGLP1P0C6A0 271 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 BMP6P22004 513 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 CYP7A1P22680 504 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 LTKP29376 864 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 KIR3DL1P43629 444 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 CDK8P49336 464 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 EPHB3P54753 998 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 PTPN11Q06124 597 aaPredicted RBP2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 ZXDCQ2QGD7 858 aaPredicted RBP2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 LARP7Q4G0J3 582 aaKnown RBP eCLIP2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 WIPI1Q5MNZ9 446 aaPredicted RBP2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 ADGRF1Q5T601 910 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 HDXQ7Z353 690 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 HID1Q8IV36 788 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 LILRA2Q8N149 483 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 OXR1Q8N573 874 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 MFSD2AQ8NA29 543 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 PPP1R13LQ8WUF5 828 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 SIGLEC10Q96LC7 697 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 BDH2Q9BUT1 245 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 ZNF552Q9H707 407 aaPredicted RBP2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 CWC22Q9HCG8 908 aaKnown RBP2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 DUSP13Q9UII6 198 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 PCDHA11Q9Y5I1 949 aa2.29□□□□□ -2.04
SMARCB1-209ENST00000635578 ARID3CA6NKF2 412 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 CST3P01034 146 aaPredicted RBP2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 CELA3AP09093 270 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 SDHBP21912 280 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 GRK4P32298 578 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 SRSF3P84103 164 aaKnown RBP2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 PLP2Q04941 152 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 LRRC14Q15048 493 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 GAB4Q2WGN9 574 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 C3orf58Q8NDZ4 430 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 PIWIL2Q8TC59 973 aaKnown RBP2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 DACT3Q96B18 629 aaPredicted RBP2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 SYTL4Q96C24 671 aaPredicted RBP2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 CEP44Q9C0F1 390 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 WNT10AQ9GZT5 417 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 DUSP15Q9H1R2 295 aaPredicted RBP2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 TRIT1Q9H3H1 467 aaKnown RBP2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 GPATCH2Q9NW75 528 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 SIRT5Q9NXA8 310 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 EGFL7Q9UHF1 273 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 SERPINA10Q9UK55 444 aa2.28□□□□□ -2.04
SMARCB1-209ENST00000635578 PNMA6FA0A0J9YX94 578 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 OR14I1A6ND48 311 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 SUV39H1O43463 412 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 IGHA2P01877 340 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 GSTT1P30711 240 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 ETV3P41162 512 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 SPATS1Q496A3 300 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 PCNX4Q63HM2 1172 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 SP8Q8IXZ3 490 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 DHX38Q92620 1227 aaKnown RBP2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 COX4I2Q96KJ9 171 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 Q96M66 194 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 TEPSINQ96N21 525 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 GPR20Q99678 358 aa2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 MBD1Q9UIS9 605 aaPredicted RBP2.27□□□□□ -2.05
SMARCB1-209ENST00000635578 ZC3H12DA2A288 527 aaKnown RBP2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 AKAP8O43823 692 aaKnown RBP2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 USP2O75604 605 aaPredicted RBP2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 VIPR1P32241 457 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 CAP2P40123 477 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 CHRNEQ04844 493 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 EFEMP1Q12805 493 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 NR0B2Q15466 257 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 CNKSR3Q6P9H4 555 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 TSPYL5Q86VY4 417 aaPredicted RBP2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 SPPL2CQ8IUH8 684 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 DMRTB1Q96MA1 342 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 CITED4Q96RK1 184 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 EPB41L4AQ9HCS5 686 aaPredicted RBP2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 EBF1Q9UH73 591 aa2.26□□□□□ -2.05
SMARCB1-209ENST00000635578 ADAMTS20P59510 1910 aa2.25□□□□□ -2.05
SMARCB1-209ENST00000635578 N4BP3O15049 544 aa2.25□□□□□ -2.05
SMARCB1-209ENST00000635578 PRICKLE3O43900 615 aaPredicted RBP2.25□□□□□ -2.05
SMARCB1-209ENST00000635578 GRIN3BO60391 1043 aa2.25□□□□□ -2.05
SMARCB1-209ENST00000635578 LRRN2O75325 713 aa2.25□□□□□ -2.05
SMARCB1-209ENST00000635578 EFEMP2O95967 443 aa2.25□□□□□ -2.05
SMARCB1-209ENST00000635578 PGRP06401 933 aa2.25□□□□□ -2.05
SMARCB1-209ENST00000635578 CDR1P51861 262 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms