RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 ZNF408Q9H9D4 720 aa17.36■□□□□ 0.37
LIMS4-203ENST00000632758 ZBTB21Q9ULJ3 1066 aa17.36■□□□□ 0.37
LIMS4-203ENST00000632758 PLIN4Q96Q06 1357 aa17.36■□□□□ 0.37
LIMS4-203ENST00000632758 PPP1R12BO60237 982 aaPredicted RBP17.35■□□□□ 0.37
LIMS4-203ENST00000632758 CTNND1O60716 968 aaKnown RBP17.35■□□□□ 0.37
LIMS4-203ENST00000632758 LARGE1O95461 756 aa17.35■□□□□ 0.37
LIMS4-203ENST00000632758 NOVP48745 357 aa17.35■□□□□ 0.37
LIMS4-203ENST00000632758 ANKRD1Q15327 319 aa17.35■□□□□ 0.37
LIMS4-203ENST00000632758 IFIT1BQ5T764 474 aaKnown RBP17.35■□□□□ 0.37
LIMS4-203ENST00000632758 DGKHQ86XP1 1220 aa17.35■□□□□ 0.37
LIMS4-203ENST00000632758 RAB11FIP4Q86YS3 637 aa17.35■□□□□ 0.37
LIMS4-203ENST00000632758 ANKS1AQ92625 1134 aa17.35■□□□□ 0.37
LIMS4-203ENST00000632758 STX8Q9UNK0 236 aa17.35■□□□□ 0.37
LIMS4-203ENST00000632758 LIMCH1Q9UPQ0 1083 aa17.35■□□□□ 0.37
LIMS4-203ENST00000632758 NF2P35240 595 aa17.34■□□□□ 0.37
LIMS4-203ENST00000632758 CCDC178Q5BJE1 867 aa17.34■□□□□ 0.37
LIMS4-203ENST00000632758 NFXL1Q6ZNB6 911 aa17.34■□□□□ 0.37
LIMS4-203ENST00000632758 SGMS1Q86VZ5 419 aa17.34■□□□□ 0.37
LIMS4-203ENST00000632758 IL27Q8NEV9 243 aa17.34■□□□□ 0.37
LIMS4-203ENST00000632758 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.34■□□□□ 0.37
LIMS4-203ENST00000632758 TMEM47Q9BQJ4 181 aa17.34■□□□□ 0.37
LIMS4-203ENST00000632758 CLIP2Q9UDT6 1046 aa17.34■□□□□ 0.37
LIMS4-203ENST00000632758 KLF18A0A0U1RQI7 1052 aa17.33■□□□□ 0.37
LIMS4-203ENST00000632758 EEF2P13639 858 aaKnown RBP17.33■□□□□ 0.37
LIMS4-203ENST00000632758 EVCP57679 992 aa17.33■□□□□ 0.37
LIMS4-203ENST00000632758 ATP2B2Q01814 1243 aa17.33■□□□□ 0.37
LIMS4-203ENST00000632758 STK3Q13188 491 aa17.33■□□□□ 0.37
LIMS4-203ENST00000632758 TTLL12Q14166 644 aaPredicted RBP17.33■□□□□ 0.37
LIMS4-203ENST00000632758 ME3Q16798 604 aa17.33■□□□□ 0.37
LIMS4-203ENST00000632758 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.33■□□□□ 0.37
LIMS4-203ENST00000632758 TMX3Q96JJ7 454 aa17.33■□□□□ 0.37
LIMS4-203ENST00000632758 MYL10Q9BUA6 226 aa17.33■□□□□ 0.37
LIMS4-203ENST00000632758 KANSL2Q9H9L4 492 aa17.33■□□□□ 0.37
LIMS4-203ENST00000632758 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.33■□□□□ 0.37
LIMS4-203ENST00000632758 NAP1L2Q9ULW6 460 aaPredicted RBP17.33■□□□□ 0.37
LIMS4-203ENST00000632758 CCDC69A6NI79 296 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 ASNSP08243 561 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 RXRAP19793 462 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 PDIA3P30101 505 aaKnown RBP17.32■□□□□ 0.36
LIMS4-203ENST00000632758 SLC4A3P48751 1232 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 MCM2P49736 904 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 MAP3K9P80192 1104 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 HSCBQ8IWL3 235 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 SCYL3Q8IZE3 742 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 TMTC2Q8N394 836 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 ZNF784Q8NCA9 323 aaPredicted RBP17.32■□□□□ 0.36
LIMS4-203ENST00000632758 CHMP4CQ96CF2 233 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 A0A1W2PRG0 241 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 UBE2Q2LH0YL09 131 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 K7ELQ4 463 aaPredicted RBP17.32■□□□□ 0.36
LIMS4-203ENST00000632758 CELF2O95319 508 aaKnown RBP17.32■□□□□ 0.36
LIMS4-203ENST00000632758 TTLL1O95922 423 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 IREB2P48200 963 aaKnown RBP17.32■□□□□ 0.36
LIMS4-203ENST00000632758 ICA1Q05084 483 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 APOA5Q6Q788 366 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 NECAB1Q8N987 351 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 ACER1Q8TDN7 264 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 NYAP2Q9P242 653 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 HPS5Q9UPZ3 1129 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 SLC12A7Q9Y666 1083 aa17.32■□□□□ 0.36
LIMS4-203ENST00000632758 TOP1P11387 765 aaKnown RBP17.31■□□□□ 0.36
LIMS4-203ENST00000632758 ECE1P42892 770 aa17.31■□□□□ 0.36
LIMS4-203ENST00000632758 VGLL4Q14135 290 aa17.31■□□□□ 0.36
LIMS4-203ENST00000632758 MAP3K11Q16584 847 aa17.31■□□□□ 0.36
LIMS4-203ENST00000632758 CST9Q5W186 159 aa17.31■□□□□ 0.36
LIMS4-203ENST00000632758 ZNF654Q8IZM8 581 aa17.31■□□□□ 0.36
LIMS4-203ENST00000632758 LRRC47Q8N1G4 583 aaKnown RBP17.31■□□□□ 0.36
LIMS4-203ENST00000632758 ZNF274Q96GC6 653 aaPredicted RBP17.31■□□□□ 0.36
LIMS4-203ENST00000632758 KAT14Q9H8E8 782 aa17.31■□□□□ 0.36
LIMS4-203ENST00000632758 MTMR7Q9Y216 660 aa17.31■□□□□ 0.36
LIMS4-203ENST00000632758 DTNBO60941 627 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 PTPRAP18433 802 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 CCT2P78371 535 aaKnown RBP17.3■□□□□ 0.36
LIMS4-203ENST00000632758 ST3GAL1Q11201 340 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 NOL9Q5SY16 702 aaKnown RBP17.3■□□□□ 0.36
LIMS4-203ENST00000632758 RASGRP2Q7LDG7 609 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 ARMC9Q7Z3E5 817 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 CCDC144CPQ8IYA2 1237 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 PNMA1Q8ND90 353 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 NUP133Q8WUM0 1156 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 MKL1Q969V6 931 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 CLMNQ96JQ2 1002 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 ZSCAN31Q96LW9 406 aaPredicted RBP17.3■□□□□ 0.36
LIMS4-203ENST00000632758 SNCAIPQ9Y6H5 919 aa17.3■□□□□ 0.36
LIMS4-203ENST00000632758 GOLGA8BA8MQT2 603 aa17.29■□□□□ 0.36
LIMS4-203ENST00000632758 ZBTB43O43298 467 aa17.29■□□□□ 0.36
LIMS4-203ENST00000632758 TROAPQ12815 778 aa17.29■□□□□ 0.36
LIMS4-203ENST00000632758 CATIPQ7Z7H3 387 aa17.29■□□□□ 0.36
LIMS4-203ENST00000632758 MICU3Q86XE3 530 aa17.29■□□□□ 0.36
LIMS4-203ENST00000632758 SLKQ9H2G2 1235 aaPredicted RBP17.29■□□□□ 0.36
LIMS4-203ENST00000632758 NCOA5Q9HCD5 579 aaKnown RBP17.29■□□□□ 0.36
LIMS4-203ENST00000632758 GBA2Q9HCG7 927 aaPredicted RBP17.29■□□□□ 0.36
LIMS4-203ENST00000632758 PICK1Q9NRD5 415 aa17.29■□□□□ 0.36
LIMS4-203ENST00000632758 GINM1Q9NU53 330 aa17.29■□□□□ 0.36
LIMS4-203ENST00000632758 USP17L5A8MUK1 530 aa17.28■□□□□ 0.36
LIMS4-203ENST00000632758 PFKFB2O60825 505 aa17.28■□□□□ 0.36
LIMS4-203ENST00000632758 SCRN1Q12765 414 aa17.28■□□□□ 0.36
LIMS4-203ENST00000632758 BECN1Q14457 450 aa17.28■□□□□ 0.36
LIMS4-203ENST00000632758 LDLRAD1Q5T700 205 aa17.28■□□□□ 0.36
LIMS4-203ENST00000632758 SYNE3Q6ZMZ3 975 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms