RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 RAG1P15918 1043 aa17.28■□□□□ 0.36
SNX1-214ENST00000625244 CCNA1P78396 465 aa17.28■□□□□ 0.36
SNX1-214ENST00000625244 LRRC41Q15345 812 aa17.28■□□□□ 0.36
SNX1-214ENST00000625244 CCDC102BQ68D86 513 aa17.28■□□□□ 0.36
SNX1-214ENST00000625244 PBX4Q9BYU1 374 aa17.28■□□□□ 0.36
SNX1-214ENST00000625244 EPHX3Q9H6B9 360 aa17.28■□□□□ 0.36
SNX1-214ENST00000625244 TRANK1O15050 2925 aa17.28■□□□□ 0.36
SNX1-214ENST00000625244 GRXCR1A8MXD5 290 aa17.27■□□□□ 0.36
SNX1-214ENST00000625244 ZBTB22O15209 634 aa17.27■□□□□ 0.36
SNX1-214ENST00000625244 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.36
SNX1-214ENST00000625244 SIL1Q9H173 461 aa17.27■□□□□ 0.36
SNX1-214ENST00000625244 TCF20Q9UGU0 1960 aaKnown RBP17.27■□□□□ 0.36
SNX1-214ENST00000625244 SEPT4O43236 478 aa17.26■□□□□ 0.35
SNX1-214ENST00000625244 GDF11O95390 407 aa17.26■□□□□ 0.35
SNX1-214ENST00000625244 IGFBP4P22692 258 aa17.26■□□□□ 0.35
SNX1-214ENST00000625244 SPTY2D1Q68D10 685 aaPredicted RBP17.26■□□□□ 0.35
SNX1-214ENST00000625244 DNAJC18Q9H819 358 aa17.26■□□□□ 0.35
SNX1-214ENST00000625244 PRKRIP1Q9H875 184 aaPredicted RBP17.26■□□□□ 0.35
SNX1-214ENST00000625244 BTBD7Q9P203 1132 aa17.26■□□□□ 0.35
SNX1-214ENST00000625244 CEP126Q9P2H0 1117 aa17.26■□□□□ 0.35
SNX1-214ENST00000625244 PI4KBQ9UBF8 816 aa17.26■□□□□ 0.35
SNX1-214ENST00000625244 IVNS1ABPQ9Y6Y0 642 aa17.26■□□□□ 0.35
SNX1-214ENST00000625244 PQBP1O60828 265 aaKnown RBP17.25■□□□□ 0.35
SNX1-214ENST00000625244 FAM47AQ5JRC9 791 aa17.25■□□□□ 0.35
SNX1-214ENST00000625244 PRAMEF19Q5SWL8 479 aa17.25■□□□□ 0.35
SNX1-214ENST00000625244 USP17L2Q6R6M4 530 aa17.25■□□□□ 0.35
SNX1-214ENST00000625244 CCDC129Q6ZRS4 1044 aa17.25■□□□□ 0.35
SNX1-214ENST00000625244 ERICH6Q7L0X2 663 aa17.25■□□□□ 0.35
SNX1-214ENST00000625244 ALYREFQ86V81 257 aaKnown RBP17.25■□□□□ 0.35
SNX1-214ENST00000625244 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.25■□□□□ 0.352e-9■■□□□ 12.4
SNX1-214ENST00000625244 USP44Q9H0E7 712 aa17.25■□□□□ 0.35
SNX1-214ENST00000625244 CXXC1Q9P0U4 656 aaPredicted RBP17.25■□□□□ 0.35
SNX1-214ENST00000625244 WDFY4Q6ZS81 3184 aa17.24■□□□□ 0.35
SNX1-214ENST00000625244 TFF2Q03403 129 aa17.24■□□□□ 0.35
SNX1-214ENST00000625244 OLFML2BQ68BL8 750 aa17.24■□□□□ 0.35
SNX1-214ENST00000625244 TMEM39AQ9NV64 488 aa17.24■□□□□ 0.35
SNX1-214ENST00000625244 ZBTB21Q9ULJ3 1066 aa17.24■□□□□ 0.35
SNX1-214ENST00000625244 PHF24Q9UPV7 400 aa17.24■□□□□ 0.35
SNX1-214ENST00000625244 PDS5AQ29RF7 1337 aaKnown RBP17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L15C9J2P7 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L13C9JLJ4 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L11C9JVI0 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L18D6R9N7 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L22D6RA61 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L17D6RBQ6 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L19D6RCP7 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L20D6RJB6 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 CIAO1O76071 339 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 MAP4K4O95819 1239 aaPredicted RBP17.23■□□□□ 0.35
SNX1-214ENST00000625244 USP17L24Q0WX57 530 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 C16orf59Q7L2K0 433 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 DPP9Q86TI2 863 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 TEX11Q8IYF3 940 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 SIPA1L1O43166 1804 aa17.23■□□□□ 0.35
SNX1-214ENST00000625244 ADORA2AP29274 412 aa17.22■□□□□ 0.35
SNX1-214ENST00000625244 KCNQ1P51787 676 aa17.22■□□□□ 0.35
SNX1-214ENST00000625244 FAAP100Q0VG06 881 aa17.22■□□□□ 0.35
SNX1-214ENST00000625244 ZYXQ15942 572 aaKnown RBP17.22■□□□□ 0.35
SNX1-214ENST00000625244 TMEM31Q5JXX7 168 aa17.22■□□□□ 0.35
SNX1-214ENST00000625244 CATSPERGQ6ZRH7 1159 aa17.22■□□□□ 0.35
SNX1-214ENST00000625244 SH3RF3Q8TEJ3 882 aaPredicted RBP17.22■□□□□ 0.35
SNX1-214ENST00000625244 NSUN4Q96CB9 384 aaKnown RBP17.22■□□□□ 0.35
SNX1-214ENST00000625244 PLXNA1Q9UIW2 1896 aa17.21■□□□□ 0.35
SNX1-214ENST00000625244 TIMM10P62072 90 aa17.21■□□□□ 0.35
SNX1-214ENST00000625244 RASIP1Q5U651 963 aa17.21■□□□□ 0.35
SNX1-214ENST00000625244 METTL16Q86W50 562 aaKnown RBP17.21■□□□□ 0.35
SNX1-214ENST00000625244 SLC44A5Q8NCS7 719 aa17.21■□□□□ 0.35
SNX1-214ENST00000625244 C12orf42Q96LP6 360 aa17.21■□□□□ 0.35
SNX1-214ENST00000625244 DHX36Q9H2U1 1008 aaKnown RBP17.21■□□□□ 0.35
SNX1-214ENST00000625244 COBLO75128 1261 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 LDHCP07864 332 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 GSTO1P78417 241 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 TMEM240Q5SV17 173 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 LBX2Q6XYB7 198 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 TBC1D9Q6ZT07 1266 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 WDR63Q8IWG1 891 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 TSPYL2Q9H2G4 693 aaPredicted RBP17.2■□□□□ 0.34
SNX1-214ENST00000625244 C11orf16Q9NQ32 467 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 GINM1Q9NU53 330 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 FBXO3Q9UK99 471 aa17.2■□□□□ 0.34
SNX1-214ENST00000625244 A0A1W2PQ45 241 aaPredicted RBP17.19■□□□□ 0.34
SNX1-214ENST00000625244 A0A1W2PQY0 241 aa17.19■□□□□ 0.34
SNX1-214ENST00000625244 TIMP1P01033 207 aa17.19■□□□□ 0.34
SNX1-214ENST00000625244 FOXP4Q8IVH2 680 aaPredicted RBP17.19■□□□□ 0.34
SNX1-214ENST00000625244 CRACR2BQ8N4Y2 399 aaPredicted RBP17.19■□□□□ 0.34
SNX1-214ENST00000625244 SNX27Q96L92 541 aa17.19■□□□□ 0.34
SNX1-214ENST00000625244 XPNPEP3Q9NQH7 507 aa17.19■□□□□ 0.34
SNX1-214ENST00000625244 SALL2Q9Y467 1007 aaPredicted RBP17.19■□□□□ 0.34
SNX1-214ENST00000625244 SPDYE16A6NNV3 312 aaPredicted RBP17.18■□□□□ 0.34
SNX1-214ENST00000625244 PGK1P00558 417 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 GH2P01242 217 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 VCAM1P19320 739 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 IL15P40933 162 aaPredicted RBP17.18■□□□□ 0.34
SNX1-214ENST00000625244 PI16Q6UXB8 463 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 ANKRD33Q7Z3H0 272 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 MAPKAPK5Q8IW41 473 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 MICALL1Q8N3F8 863 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 TOX2Q96NM4 488 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 FEZ1Q99689 392 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 MOV10L1Q9BXT6 1211 aaKnown RBP17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms