RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 P4HA1P13674 534 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 CALCOCO2Q13137 446 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 PAK1Q13153 545 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 BMS1Q14692 1282 aaKnown RBP12.68□□□□□ -0.38
CLIP1-219ENST00000620786 SDR42E1Q8WUS8 393 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 JAKMIP2Q96AA8 810 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 FAM193BQ96PV7 902 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-219ENST00000620786 DDX23Q9BUQ8 820 aaKnown RBP12.68□□□□□ -0.38
CLIP1-219ENST00000620786 DSCC1Q9BVC3 393 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 CSRNP2Q9H175 543 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 CD19P15391 556 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 ATP5JP18859 108 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 OSBPP22059 807 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 NSMCE1Q8WV22 266 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 ASAP1Q9ULH1 1129 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 CRCPO75575 148 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 PSMC4P43686 418 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 TNNC1P63316 161 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 ERCC5P28715 1186 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-219ENST00000620786 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.67□□□□□ -0.38
CLIP1-219ENST00000620786 ADGBQ8N7X0 1667 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 SGSM2O43147 1006 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 UAP1Q16222 522 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-219ENST00000620786 ABCB5Q2M3G0 1257 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 CCDC122Q5T0U0 273 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 KRT40Q6A162 431 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 PSTPIP2Q9H939 334 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 OPA1O60313 960 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 TNNI1P19237 187 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 CCDC125Q86Z20 511 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 IL17REQ8NFR9 667 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 FBF1Q8TES7 1133 aa12.67□□□□□ -0.38
CLIP1-219ENST00000620786 MAP7D1Q3KQU3 841 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 ZBTB8OSQ8IWT0 167 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 RIOK1Q9BRS2 568 aaKnown RBP12.66□□□□□ -0.38
CLIP1-219ENST00000620786 PRR16Q569H4 304 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 DPP9Q86TI2 863 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 FBXO11Q86XK2 927 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 IFNL3Q8IZI9 196 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 KCNG1Q9UIX4 513 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 USTQ9Y2C2 406 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 KDM3AQ9Y4C1 1321 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 CFAP157Q5JU67 520 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 GIMAP7Q8NHV1 300 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 CCT6BQ92526 530 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 CD2APQ9Y5K6 639 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 INSRP06213 1382 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 ZNF654Q8IZM8 581 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 GREM2Q9H772 168 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 KDM5DQ9BY66 1539 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 FAM135BQ49AJ0 1406 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 TRIM14Q14142 442 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 DCUN1D2Q6PH85 259 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 ARMC9Q7Z3E5 817 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 CCPG1Q9ULG6 757 aa12.66□□□□□ -0.38
CLIP1-219ENST00000620786 PTPRTO14522 1441 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 LRRC24Q50LG9 513 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 TTC14Q96N46 770 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 NT5C3AQ9H0P0 336 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 HAUS2Q9NVX0 235 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 YARSP54577 528 aaKnown RBP12.65□□□□□ -0.38
CLIP1-219ENST00000620786 IGBP1P78318 339 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 ZBTB16Q05516 673 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 IGSF22Q8N9C0 903 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 DBNDD1Q9H9R9 158 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 NPC1L1Q9UHC9 1359 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 TMEM232C9JQI7 657 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 ERCC3P19447 782 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 YWHAEP62258 255 aaKnown RBP12.65□□□□□ -0.38
CLIP1-219ENST00000620786 ERFEQ4G0M1 354 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 GOLGA8HP0CJ92 632 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 CCNA1P78396 465 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 KCTD2Q14681 263 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 GEN1Q17RS7 908 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 UNC5CLQ8IV45 518 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 KCNK9Q9NPC2 374 aa12.65□□□□□ -0.38
CLIP1-219ENST00000620786 ZMYM4Q5VZL5 1548 aa12.65□□□□□ -0.39
CLIP1-219ENST00000620786 GTF2F1P35269 517 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 KCNQ4P56696 695 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 DALRD3Q5D0E6 543 aaKnown RBP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 XKR9Q5GH70 373 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 CMTR1Q8N1G2 835 aaKnown RBP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 UBL4BQ8N7F7 174 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 EDC3Q96F86 508 aaKnown RBP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 BAG1Q99933 345 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 ABT1Q9ULW3 272 aaKnown RBP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 BCRP11274 1271 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 SLFN13Q68D06 897 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 MCTP2Q6DN12 878 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 SEPT12Q8IYM1 358 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 NAP1L3Q99457 506 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 LEMD3Q9Y2U8 911 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 ERBB4Q15303 1308 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 PER1O15534 1290 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 PDE6AP16499 860 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 TEKT3Q9BXF9 490 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 BLZF1Q9H2G9 400 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 ABL1P00519 1130 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 LIG4P49917 911 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 CCDC26Q8TAB7 109 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms