RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 KLHL30Q0D2K2 578 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 CEP83Q9Y592 693 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 ADCY9O60503 1353 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 RBM6P78332 1123 aaKnown RBP15.61■□□□□ 0.09
CPSF1-212ENST00000616140 ASIC2Q16515 512 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 TTC31Q49AM3 519 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-212ENST00000616140 SEL1L2Q5TEA6 688 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 NCAPH2Q6IBW4 605 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 SND1Q7KZF4 910 aaKnown RBP eCLIP15.61■□□□□ 0.09
CPSF1-212ENST00000616140 SAMD15Q9P1V8 674 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 IGSF1Q8N6C5 1336 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 GOLGA6BA6NDN3 693 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 BCAMP50895 628 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 RRAGAQ7L523 313 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 OAS2P29728 719 aaKnown RBP15.6■□□□□ 0.09
CPSF1-212ENST00000616140 C2CD5Q86YS7 1000 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 KLHL7Q8IXQ5 586 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 ZBTB38Q8NAP3 1195 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-212ENST00000616140 CCDC97Q96F63 343 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-212ENST00000616140 EEF2KMTQ96G04 330 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 CDCA7Q9BWT1 371 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-212ENST00000616140 IFIH1Q9BYX4 1025 aaKnown RBP15.6■□□□□ 0.09
CPSF1-212ENST00000616140 PARP3Q9Y6F1 533 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 METP08581 1390 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 A0A087WWV3 80 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 HARSP12081 509 aaKnown RBP15.6■□□□□ 0.09
CPSF1-212ENST00000616140 TYW1BQ6NUM6 668 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 TSNARE1Q96NA8 513 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 NAP1L3Q99457 506 aaPredicted RBP15.6■□□□□ 0.09
CPSF1-212ENST00000616140 ZMYM6O95789 1325 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 IFT20Q8IY31 132 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 GLT8D2Q9H1C3 349 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 CCDC169A6NNP5 214 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 ADORA1P30542 326 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 PHKA1P46020 1223 aa15.6■□□□□ 0.09
CPSF1-212ENST00000616140 ZYXQ15942 572 aaKnown RBP15.6■□□□□ 0.09
CPSF1-212ENST00000616140 PRAMEF22A3QJZ6 481 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 PCCAP05165 728 aaPredicted RBP15.59■□□□□ 0.09
CPSF1-212ENST00000616140 VIMP08670 466 aaKnown RBP15.59■□□□□ 0.09
CPSF1-212ENST00000616140 KRT5P13647 590 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 MAEAQ7L5Y9 396 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 RBM17Q96I25 401 aaKnown RBP15.59■□□□□ 0.09
CPSF1-212ENST00000616140 FNBP1Q96RU3 617 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 FTOQ9C0B1 505 aaKnown RBP eCLIP15.59■□□□□ 0.09
CPSF1-212ENST00000616140 DNM3Q9UQ16 869 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 SAR1BQ9Y6B6 198 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 ARHGEF35A5YM69 484 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 SMCO2A6NFE2 343 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 ACTN4O43707 911 aaKnown RBP15.59■□□□□ 0.09
CPSF1-212ENST00000616140 PPP2R2CQ9Y2T4 447 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 NSUN7Q8NE18 718 aaKnown RBP15.59■□□□□ 0.09
CPSF1-212ENST00000616140 LZTS2Q9BRK4 669 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 ABCA5Q8WWZ7 1642 aa15.59■□□□□ 0.09
CPSF1-212ENST00000616140 ZMYM1Q5SVZ6 1142 aa15.58■□□□□ 0.09
CPSF1-212ENST00000616140 GPR161Q8N6U8 529 aaKnown RBP15.58■□□□□ 0.09
CPSF1-212ENST00000616140 CCDC63Q8NA47 563 aa15.58■□□□□ 0.09
CPSF1-212ENST00000616140 TDRD7Q8NHU6 1098 aaKnown RBP15.58■□□□□ 0.09
CPSF1-212ENST00000616140 JDP2Q8WYK2 163 aa15.58■□□□□ 0.09
CPSF1-212ENST00000616140 RTEL1Q9NZ71 1219 aa15.58■□□□□ 0.09
CPSF1-212ENST00000616140 ERBB4Q15303 1308 aa15.58■□□□□ 0.09
CPSF1-212ENST00000616140 KIF21AQ7Z4S6 1674 aa15.58■□□□□ 0.09
CPSF1-212ENST00000616140 A0A1W2PQ27 194 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 A0A1W2PQ64 194 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 A0A1W2PQD8 194 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 PDE8BO95263 885 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 PNMA1Q8ND90 353 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 CCDC51Q96ER9 411 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 ZSCAN10Q96SZ4 725 aaPredicted RBP15.58■□□□□ 0.08
CPSF1-212ENST00000616140 GREM2Q9H772 168 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 KCNJ18B7U540 433 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 KCNJ12Q14500 433 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 INF2Q27J81 1249 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 DPCR1Q3MIW9 517 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 BLIDQ8IZY5 108 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 FLOT1O75955 427 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 TCP10Q12799 353 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 APOA5Q6Q788 366 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 LRRC45Q96CN5 670 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 PSMD1Q99460 953 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 PLEKHA4Q9H4M7 779 aa15.58■□□□□ 0.08
CPSF1-212ENST00000616140 EXOC3O60645 756 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 LARGE1O95461 756 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 SLC39A14Q15043 492 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 CFAP221Q4G0U5 840 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 DAAM2Q86T65 1068 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 CERS3Q8IU89 383 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 CACTINQ8WUQ7 758 aaKnown RBP15.57■□□□□ 0.08
CPSF1-212ENST00000616140 CTTNBP2NLQ9P2B4 639 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 PTGDRQ13258 359 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 RPS6KA1Q15418 735 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 USH1GQ495M9 461 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 TRIML1Q8N9V2 468 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 NKIRAS1Q9NYS0 192 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 ARPP21Q9UBL0 812 aaPredicted RBP15.57■□□□□ 0.08
CPSF1-212ENST00000616140 BIN2Q9UBW5 565 aaPredicted RBP15.57■□□□□ 0.08
CPSF1-212ENST00000616140 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.57■□□□□ 0.08
CPSF1-212ENST00000616140 UBE3CQ15386 1083 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 KIAA1524Q8TCG1 905 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 CEP63Q96MT8 703 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 SH2D4AQ9H788 454 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms