RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MMRN2Q9H8L6 949 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 MKNK2Q9HBH9 465 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 STX8Q9UNK0 236 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 TNKSO95271 1327 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 PXDNQ92626 1479 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 PDE8BO95263 885 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 IFNAR1P17181 557 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 PTPREP23469 700 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 TBC1D8BQ0IIM8 1120 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 TRIML1Q8N9V2 468 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 LPIN2Q92539 896 aa14.2□□□□□ -0.14
LIG1-221ENST00000613670 NAA15Q9BXJ9 866 aaKnown RBP14.2□□□□□ -0.14
LIG1-221ENST00000613670 MAP3K9P80192 1104 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 UBE3CQ15386 1083 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 FOXP4Q8IVH2 680 aaPredicted RBP14.19□□□□□ -0.14
LIG1-221ENST00000613670 GOLGA5Q8TBA6 731 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 TEX13AQ9BXU3 409 aaPredicted RBP14.19□□□□□ -0.14
LIG1-221ENST00000613670 PCDH11XQ9BZA7 1347 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 PCDH11YQ9BZA8 1340 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 FAM205CA6NFA0 338 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 TBC1D8O95759 1140 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 ACTN2P35609 894 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 GTF2A1P52655 376 aaPredicted RBP14.19□□□□□ -0.14
LIG1-221ENST00000613670 ASIC1P78348 528 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 CKAP4Q07065 602 aaKnown RBP14.19□□□□□ -0.14
LIG1-221ENST00000613670 TTC31Q49AM3 519 aaPredicted RBP14.19□□□□□ -0.14
LIG1-221ENST00000613670 ZBTB38Q8NAP3 1195 aaPredicted RBP14.19□□□□□ -0.14
LIG1-221ENST00000613670 RRP15Q9Y3B9 282 aaKnown RBP14.19□□□□□ -0.14
LIG1-221ENST00000613670 ADGRG1Q9Y653 693 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 NCAPD2Q15021 1401 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 KCNJ18B7U540 433 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 TRIM66O15016 1216 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 ERCC5P28715 1186 aaPredicted RBP14.19□□□□□ -0.14
LIG1-221ENST00000613670 MORC3Q14149 939 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 KCNJ12Q14500 433 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 SOGA3Q5TF21 947 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 TRIM65Q6PJ69 517 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 FAM204AQ9H8W3 233 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 ASAP1Q9ULH1 1129 aa14.19□□□□□ -0.14
LIG1-221ENST00000613670 ZEB2O60315 1214 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 PCCAP05165 728 aaPredicted RBP14.18□□□□□ -0.14
LIG1-221ENST00000613670 KCNJ6P48051 423 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 CTSWP56202 376 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 KRT83P78385 493 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 HEATR3Q7Z4Q2 680 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 GPATCH11Q8N954 259 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 STRBPQ96SI9 672 aaKnown RBP14.18□□□□□ -0.14
LIG1-221ENST00000613670 TCP11L1Q9NUJ3 509 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 EPN1Q9Y6I3 576 aaPredicted RBP14.18□□□□□ -0.14
LIG1-221ENST00000613670 MYO1CO00159 1063 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 GNAT2P19087 354 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 MRPS25P82663 173 aaKnown RBP14.18□□□□□ -0.14
LIG1-221ENST00000613670 CASP8Q14790 479 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 JAKMIP2Q96AA8 810 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 AGXT2Q9BYV1 514 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 LY9Q9HBG7 655 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 TFRCP02786 760 aaKnown RBP14.18□□□□□ -0.14
LIG1-221ENST00000613670 USP5P45974 858 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 FAM47AQ5JRC9 791 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 RAD9BQ6WBX8 426 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 LCORLQ8N3X6 602 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 FOXP1Q9H334 677 aaPredicted RBP14.18□□□□□ -0.14
LIG1-221ENST00000613670 KAT14Q9H8E8 782 aa14.18□□□□□ -0.14
LIG1-221ENST00000613670 SPATA31D1Q6ZQQ2 1576 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 CYP2D7A0A087X1C5 515 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 PPARAQ07869 468 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 RNF187Q5TA31 235 aaPredicted RBP14.17□□□□□ -0.14
LIG1-221ENST00000613670 EXOC4Q96A65 974 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 EXOC1Q9NV70 894 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 SAR1BQ9Y6B6 198 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 HEG1Q9ULI3 1381 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 PEAK1Q9H792 1746 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 COPB1P53618 953 aaKnown RBP14.17□□□□□ -0.14
LIG1-221ENST00000613670 RNASE9P60153 205 aaKnown RBP14.17□□□□□ -0.14
LIG1-221ENST00000613670 ARID5AQ03989 594 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 ODF2Q5BJF6 829 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 CRACR2BQ8N4Y2 399 aaPredicted RBP14.17□□□□□ -0.14
LIG1-221ENST00000613670 EHBP1Q8NDI1 1231 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 OR8K1Q8NGG5 319 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.17□□□□□ -0.14
LIG1-221ENST00000613670 SRPRBQ9Y5M8 271 aaKnown RBP14.17□□□□□ -0.14
LIG1-221ENST00000613670 MFAP3LO75121 409 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 SASH3O75995 380 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 HLTFQ14527 1009 aaKnown RBP eCLIP14.17□□□□□ -0.14
LIG1-221ENST00000613670 WHAMMP3Q1A5X7 153 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 DTHD1Q6ZMT9 781 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 SND1Q7KZF4 910 aaKnown RBP eCLIP14.17□□□□□ -0.14
LIG1-221ENST00000613670 CSGALNACT2Q8N6G5 542 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 FAM76AQ8TAV0 307 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 PAGE5Q96GU1 130 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.17□□□□□ -0.146e-6■□□□□ 8.9
LIG1-221ENST00000613670 RTL9Q8NET4 1388 aa14.17□□□□□ -0.14
LIG1-221ENST00000613670 DIP2AQ14689 1571 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 SALL1Q9NSC2 1324 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 PDE8AO60658 829 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 SRGAP2O75044 1071 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 ATP2B2Q01814 1243 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 PTPAQ15257 358 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 TTC19Q6DKK2 380 aaPredicted RBP14.16□□□□□ -0.14
LIG1-221ENST00000613670 TTLL11Q8NHH1 800 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms