RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 USP17L21D6R901 530 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 M0R2C6 588 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 RNF113AO15541 343 aaKnown RBP13.84□□□□□ -0.19
LINC00539-204ENST00000608957 GNRH1P01148 92 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 PRKCZQ05513 592 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 RAB3GAP1Q15042 981 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 ZYXQ15942 572 aaKnown RBP13.84□□□□□ -0.19
LINC00539-204ENST00000608957 FAM110CQ1W6H9 321 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 SLC9C1Q4G0N8 1177 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 C12orf60Q5U649 245 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 ZSCAN25Q6NSZ9 544 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 CTR9Q6PD62 1173 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 APPBP2Q92624 585 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 C12orf42Q96LP6 360 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 P2RX7Q99572 595 aaKnown RBP13.84□□□□□ -0.19
LINC00539-204ENST00000608957 PNMA3Q9UL41 463 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 A0A0G2JMZ2 1700 aa13.84□□□□□ -0.19
LINC00539-204ENST00000608957 A0A1W2PRG0 241 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 GSG1L2A8MUP6 293 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 AKR1B1P15121 316 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 MX1P20591 662 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 PDE1AP54750 535 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 PRMT2P55345 433 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 FCGRTP55899 365 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 BMP2KLQ5H9B9 411 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L2Q6R6M4 530 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 CLEC10AQ8IUN9 316 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 SEC62Q99442 399 aaKnown RBP13.83□□□□□ -0.2
LINC00539-204ENST00000608957 OSBPL3Q9H4L5 887 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 EPB41L4AQ9HCS5 686 aaPredicted RBP13.83□□□□□ -0.2
LINC00539-204ENST00000608957 TXNRD2Q9NNW7 524 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 TMOD4Q9NZQ9 345 aa13.83□□□□□ -0.2
LINC00539-204ENST00000608957 GLRX3O76003 335 aaKnown RBP13.82□□□□□ -0.2
LINC00539-204ENST00000608957 MYCP01106 439 aaPredicted RBP13.82□□□□□ -0.2
LINC00539-204ENST00000608957 EN2P19622 333 aaPredicted RBP13.82□□□□□ -0.2
LINC00539-204ENST00000608957 CDK8P49336 464 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 PABPC4Q13310 644 aaKnown RBP eCLIP13.82□□□□□ -0.2
LINC00539-204ENST00000608957 C8orf34Q49A92 452 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 KIAA1755Q5JYT7 1200 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 TTC22Q5TAA0 569 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 C16orf86Q6ZW13 317 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 SIAH1Q8IUQ4 282 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 KIAA1683Q9H0B3 1180 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 CABP5Q9NP86 173 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 TSHZ2Q9NRE2 1034 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 MORF4L1Q9UBU8 362 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 STAP2Q9UGK3 403 aa13.82□□□□□ -0.2
LINC00539-204ENST00000608957 ZNFX1Q9P2E3 1918 aaKnown RBP13.82□□□□□ -0.2
LINC00539-204ENST00000608957 ERC2O15083 957 aa13.81□□□□□ -0.2
LINC00539-204ENST00000608957 GPAA1O43292 621 aa13.81□□□□□ -0.2
LINC00539-204ENST00000608957 GSPT1P15170 499 aaKnown RBP13.81□□□□□ -0.2
LINC00539-204ENST00000608957 GCLCP48506 637 aaPredicted RBP13.81□□□□□ -0.2
LINC00539-204ENST00000608957 HERVK_113P62684 666 aa13.81□□□□□ -0.2
LINC00539-204ENST00000608957 IRX3P78415 501 aaPredicted RBP13.81□□□□□ -0.2
LINC00539-204ENST00000608957 MTFR1Q15390 333 aa13.81□□□□□ -0.2
LINC00539-204ENST00000608957 BACH2Q9BYV9 841 aa13.81□□□□□ -0.2
LINC00539-204ENST00000608957 RBPJLQ9UBG7 517 aa13.81□□□□□ -0.2
LINC00539-204ENST00000608957 SWAP70Q9UH65 585 aa13.81□□□□□ -0.2
LINC00539-204ENST00000608957 MKI67P46013 3256 aaKnown RBP13.8□□□□□ -0.2
LINC00539-204ENST00000608957 MPHOSPH10O00566 681 aaKnown RBP13.8□□□□□ -0.2
LINC00539-204ENST00000608957 CNMDO75829 334 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 VCAM1P19320 739 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 HOXD10P28358 340 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 GRK4P32298 578 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 FLT3LGP49771 235 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 Q3C1V9 767 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 SBK1Q52WX2 424 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 ZMYM1Q5SVZ6 1142 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 RAET1EQ8TD07 263 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 FEZ1Q99689 392 aa13.8□□□□□ -0.2
LINC00539-204ENST00000608957 TNPO2O14787 897 aaKnown RBP13.79□□□□□ -0.2
LINC00539-204ENST00000608957 FOXP2O15409 715 aa13.79□□□□□ -0.2
LINC00539-204ENST00000608957 ZFYP08048 801 aaPredicted RBP13.79□□□□□ -0.2
LINC00539-204ENST00000608957 ELNP15502 786 aa13.79□□□□□ -0.2
LINC00539-204ENST00000608957 CATSPERGQ6ZRH7 1159 aa13.79□□□□□ -0.2
LINC00539-204ENST00000608957 TMEM179Q6ZVK1 233 aa13.79□□□□□ -0.2
LINC00539-204ENST00000608957 NBPF11Q86T75 865 aa13.79□□□□□ -0.2
LINC00539-204ENST00000608957 FSD1Q9BTV5 496 aa13.79□□□□□ -0.2
LINC00539-204ENST00000608957 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.79□□□□□ -0.2
LINC00539-204ENST00000608957 ARPP21Q9UBL0 812 aaPredicted RBP13.79□□□□□ -0.2
LINC00539-204ENST00000608957 GJD2Q9UKL4 321 aa13.79□□□□□ -0.2
LINC00539-204ENST00000608957 ROBO3Q96MS0 1386 aa13.79□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L15C9J2P7 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L13C9JLJ4 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L11C9JVI0 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L18D6R9N7 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L22D6RA61 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L17D6RBQ6 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L19D6RCP7 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L20D6RJB6 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP14P54578 494 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 ERVK-9P63128 1117 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 ERVK-24P63145 666 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 USP17L24Q0WX57 530 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 IRF5Q13568 498 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 GIMAP6Q6P9H5 292 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 CCDC129Q6ZRS4 1044 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 STK11IPQ8N1F8 1099 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 SHISA4Q96DD7 197 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 PORCNQ9H237 461 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms