RNA–Protein interactions for RNA: ENST00000606676.1

SHROOM1-207, Transcript of shroom family member 1, humanhuman

Gene SHROOM1, Length 351 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-207ENST00000606676 HOXA7P31268 230 aaPredicted RBP15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 TDO2P48775 406 aa15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 PKN2Q16513 984 aaKnown RBP15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 MCMDC2Q4G0Z9 681 aa15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 USP17L2Q6R6M4 530 aa15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 TMEM179Q6ZVK1 233 aa15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 CCDC17Q96LX7 622 aa15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 KIAA1683Q9H0B3 1180 aa15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 ASCC2Q9H1I8 757 aaPredicted RBP15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 EFCC1Q9HA90 598 aa15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 TMOD4Q9NZQ9 345 aa15.3■□□□□ 0.04
SHROOM1-207ENST00000606676 CAPN15O75808 1086 aa15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 GSPT1P15170 499 aaKnown RBP15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 PABPC4Q13310 644 aaKnown RBP eCLIP15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 FBXO46Q6PJ61 603 aaPredicted RBP15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 ZNF589Q86UQ0 364 aaPredicted RBP15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 CLEC10AQ8IUN9 316 aa15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 STK11IPQ8N1F8 1099 aa15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 C12orf42Q96LP6 360 aa15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 NACAP1Q9BZK3 213 aa15.29■□□□□ 0.04
SHROOM1-207ENST00000606676 BRCA2P51587 3418 aa15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 RASA1P20936 1047 aa15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 USP14P54578 494 aa15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 ZYXQ15942 572 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 TTC22Q5TAA0 569 aa15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 SMCR8Q8TEV9 937 aaPredicted RBP15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 P2RX7Q99572 595 aaKnown RBP15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 NAPBQ9H115 298 aa15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 PNMA3Q9UL41 463 aa15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 HPS5Q9UPZ3 1129 aa15.28■□□□□ 0.04
SHROOM1-207ENST00000606676 OSBPP22059 807 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 PPARAQ07869 468 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 ALX1Q15699 326 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 KIAA1755Q5JYT7 1200 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 POTEEQ6S8J3 1075 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 TRIM47Q96LD4 638 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 FEZ1Q99689 392 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 MKNK2Q9HBH9 465 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 PTPN22Q9Y2R2 807 aa15.27■□□□□ 0.04
SHROOM1-207ENST00000606676 CCDC171Q6TFL3 1326 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 PRDM1O75626 825 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 ECM2O94769 699 aaPredicted RBP15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 FGAP02671 866 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 HSPD1P10809 573 aaKnown RBP15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 VCAM1P19320 739 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 PSMC4P43686 418 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 ICA1Q05084 483 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 KIF22Q14807 665 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 TMX2Q9Y320 296 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 TACC3Q9Y6A5 838 aa15.26■□□□□ 0.03
SHROOM1-207ENST00000606676 CCDC85CA6NKD9 419 aa15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 EEF2P13639 858 aaKnown RBP15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 GCLCP48506 637 aaPredicted RBP15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 HERVK_113P62684 666 aa15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 IRX3P78415 501 aaPredicted RBP15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 ARHGEF6Q15052 776 aa15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 FAM110CQ1W6H9 321 aa15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 CWC27Q6UX04 472 aaKnown RBP15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 ANKRD13CQ8N6S4 541 aa15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 KANSL2Q9H9L4 492 aa15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 ANAPC4Q9UJX5 808 aa15.25■□□□□ 0.03
SHROOM1-207ENST00000606676 ZSWIM8A7E2V4 1837 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 IGKV6D-41A0A0C4DH26 115 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L15C9J2P7 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L13C9JLJ4 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L11C9JVI0 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L18D6R9N7 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L22D6RA61 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L17D6RBQ6 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L19D6RCP7 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L20D6RJB6 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 HIP1O00291 1037 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 PEX10O60683 326 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 GNRH1P01148 92 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 CTDSPL2Q05D32 466 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 USP17L24Q0WX57 530 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 CATSPERGQ6ZRH7 1159 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 CENPQQ7L2Z9 268 aaPredicted RBP15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 IL25Q9H293 177 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 ZNF287Q9HBT7 754 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 TXNRD2Q9NNW7 524 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 INCENPQ9NQS7 918 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 DIAPH3Q9NSV4 1193 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 RBPJLQ9UBG7 517 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 MORF4L1Q9UBU8 362 aa15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.24■□□□□ 0.03
SHROOM1-207ENST00000606676 ZMYM6O95789 1325 aa15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 FMNL1O95466 1100 aaPredicted RBP15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 PDE4BQ07343 736 aa15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 ZNF444Q8N0Y2 327 aaPredicted RBP15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 RPAP3Q9H6T3 665 aaPredicted RBP15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 VCPKMTQ9H867 229 aa15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 ARHGEF10LQ9HCE6 1279 aa15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 SRRDQ9UH36 339 aa15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 PTCH2Q9Y6C5 1203 aa15.23■□□□□ 0.03
SHROOM1-207ENST00000606676 GREB1LQ9C091 1923 aaPredicted RBP15.22■□□□□ 0.03
SHROOM1-207ENST00000606676 SLC3A2P08195 630 aaKnown RBP15.22■□□□□ 0.03
SHROOM1-207ENST00000606676 FGRP09769 529 aa15.22■□□□□ 0.03
SHROOM1-207ENST00000606676 MFAP1P55081 439 aaKnown RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms