RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 SNX17Q15036 470 aa17.06■□□□□ 0.32
SHKBP1-218ENST00000598907 ATP2B3Q16720 1220 aa17.06■□□□□ 0.32
SHKBP1-218ENST00000598907 EXOC6Q8TAG9 804 aa17.06■□□□□ 0.32
SHKBP1-218ENST00000598907 NCOR1O75376 2440 aa17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 GLRX3O76003 335 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 NEFLP07196 543 aa17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 CYBAP13498 195 aa17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 IGFBP4P22692 258 aa17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 FPGSQ05932 587 aa17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 SHROOM1Q2M3G4 852 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 SLF2Q8IX21 1173 aa17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 ZGPATQ8N5A5 531 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 NPLOC4Q8TAT6 608 aa17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 ZBTB40Q9NUA8 1239 aa17.05■□□□□ 0.32
SHKBP1-218ENST00000598907 TCF20Q9UGU0 1960 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 RAG1P15918 1043 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 PBX2P40425 430 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 RHBDL3P58872 404 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 JAG1P78504 1218 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 AAMPQ13685 434 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 CCDC129Q6ZRS4 1044 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 MEIS3Q99687 375 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 WDR18Q9BV38 432 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 SIL1Q9H173 461 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 CHMP4BQ9H444 224 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 SIPA1L1O43166 1804 aa17.04■□□□□ 0.32
SHKBP1-218ENST00000598907 SLC15A5A6NIM6 579 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 SEMA3EO15041 775 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 GDF11O95390 407 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 CLTBP09497 229 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 PTPREP23469 700 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 AKNAD1Q5T1N1 836 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 ERICH6BQ5W0A0 696 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 GTF3C2Q8WUA4 911 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 LRFN3Q9BTN0 628 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 IVNS1ABPQ9Y6Y0 642 aa17.03■□□□□ 0.32
SHKBP1-218ENST00000598907 PLXNA1Q9UIW2 1896 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 GRXCR1A8MXD5 290 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 USP17L10C9JJH3 530 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 PQBP1O60828 265 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 CNMDO75829 334 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 GNAI3P08754 354 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 ADORA1P30542 326 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 CCNA1P78396 465 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 MECOMQ03112 1051 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 RASGRF1Q13972 1273 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 ADGRE1Q14246 886 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 ZYXQ15942 572 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 MICALL1Q8N3F8 863 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 TACC3Q9Y6A5 838 aa17.02■□□□□ 0.32
SHKBP1-218ENST00000598907 ASNSP08243 561 aa17.01■□□□□ 0.31
SHKBP1-218ENST00000598907 ATG9AQ7Z3C6 839 aa17.01■□□□□ 0.31
SHKBP1-218ENST00000598907 ALYREFQ86V81 257 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-218ENST00000598907 PBX4Q9BYU1 374 aa17.01■□□□□ 0.31
SHKBP1-218ENST00000598907 GPR75-ASB3A0A0A6YYF3 556 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 C19orf81C9J6K1 198 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 TFF2Q03403 129 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 GRB14Q14449 540 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 LRRC41Q15345 812 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 FAM47AQ5JRC9 791 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 CCDC102BQ68D86 513 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 FAM163AQ96GL9 167 aaPredicted RBP17■□□□□ 0.31
SHKBP1-218ENST00000598907 EPHX3Q9H6B9 360 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 EMILIN3Q9NT22 766 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 HERC5Q9UII4 1024 aaKnown RBP17■□□□□ 0.31
SHKBP1-218ENST00000598907 RABGAP1Q9Y3P9 1069 aa17■□□□□ 0.31
SHKBP1-218ENST00000598907 HOXC6P09630 235 aa16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 UBTFL1P0CB47 393 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 RFX5P48382 616 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 KCNQ1P51787 676 aa16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 SPTY2D1Q68D10 685 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 TEX11Q8IYF3 940 aa16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 ZNF384Q8TF68 577 aa16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 FEZ1Q99689 392 aa16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 TMEM39AQ9NV64 488 aa16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 ZBTB21Q9ULJ3 1066 aa16.99■□□□□ 0.31
SHKBP1-218ENST00000598907 KIAA0355O15063 1070 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 SEPT4O43236 478 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 NPM3O75607 178 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 PRAMEF19Q5SWL8 479 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 ERICH6Q7L0X2 663 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 DPP9Q86TI2 863 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 TRIM34Q9BYJ4 488 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 DNAJC18Q9H819 358 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 CEP126Q9P2H0 1117 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 HDAC5Q9UQL6 1122 aa16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 ARIH1Q9Y4X5 557 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-218ENST00000598907 FAM86C2PA6NEL3 165 aa16.97■□□□□ 0.31
SHKBP1-218ENST00000598907 GNAI2P04899 355 aa16.97■□□□□ 0.31
SHKBP1-218ENST00000598907 TMEM31Q5JXX7 168 aa16.97■□□□□ 0.31
SHKBP1-218ENST00000598907 C1orf53Q5VUE5 145 aa16.97■□□□□ 0.31
SHKBP1-218ENST00000598907 USP17L2Q6R6M4 530 aa16.97■□□□□ 0.31
SHKBP1-218ENST00000598907 CRACR2BQ8N4Y2 399 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-218ENST00000598907 TSPYL2Q9H2G4 693 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-218ENST00000598907 BTBD7Q9P203 1132 aa16.97■□□□□ 0.31
SHKBP1-218ENST00000598907 ZNF236Q9UL36 1845 aa16.96■□□□□ 0.31
SHKBP1-218ENST00000598907 BMP1P13497 986 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms