RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 SPTLC2O15270 562 aa19.72■□□□□ 0.75
SHKBP1-216ENST00000598201 PLCG2P16885 1265 aa19.72■□□□□ 0.75
SHKBP1-216ENST00000598201 RBM43Q6ZSC3 357 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-216ENST00000598201 RBM28Q9NW13 759 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-216ENST00000598201 DCAF8L1A6NGE4 600 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 NFKBIEO00221 500 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 ADALQ6DHV7 355 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 TMTC3Q6ZXV5 915 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 FSIP1Q8NA03 581 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 ENGASEQ8NFI3 743 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 KCNG4Q8TDN1 519 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 PSMD1Q99460 953 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 KCNQ5Q9NR82 932 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 DDX60LQ5H9U9 1706 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 USP17L3A6NCW0 530 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 USP17L4A6NCW7 530 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 RASA1P20936 1047 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 SF3A1Q15459 793 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 USP17L1Q7RTZ2 530 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 DIS3L2Q8IYB7 885 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 TAOK3Q9H2K8 898 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 DBNDD1Q9H9R9 158 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 SUGT1Q9Y2Z0 365 aa19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 V9GY48 417 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-216ENST00000598201 PRPF3O43395 683 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-216ENST00000598201 NOSTRINQ8IVI9 506 aa19.7■□□□□ 0.74
SHKBP1-216ENST00000598201 SRBD1Q8N5C6 995 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-216ENST00000598201 MAP3K14Q99558 947 aa19.7■□□□□ 0.74
SHKBP1-216ENST00000598201 TTF2Q9UNY4 1162 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-216ENST00000598201 CCDC192P0DO97 292 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 SLC39A14Q15043 492 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 CCDC73Q6ZRK6 1079 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 SUPT20HQ8NEM7 779 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 OXER1Q8TDS5 423 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 PDLIM2Q96JY6 352 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 EYA3Q99504 573 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 FER1L6Q2WGJ9 1857 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 A0A1W2PQ27 194 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 A0A1W2PQ64 194 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 A0A1W2PQD8 194 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 G3V3G9 751 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 CDK8P49336 464 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 SCNN1DP51172 638 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 FAM160A1Q05DH4 1040 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 PTPAQ15257 358 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 AXDND1Q5T1B0 1012 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 DCAF8Q5TAQ9 597 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 C16orf86Q6ZW13 317 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 DGKHQ86XP1 1220 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 ZNF444Q8N0Y2 327 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 CTCFLQ8NI51 663 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 ANKS1AQ92625 1134 aa19.69■□□□□ 0.74
SHKBP1-216ENST00000598201 CNTNAP5Q8WYK1 1306 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 A0A1B0GVL5 298 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 WDHD1O75717 1129 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 TSPY3P0CV98 308 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 TSPY8P0CW00 308 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 MARCKSP29966 332 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 AKAP17AQ02040 695 aaKnown RBP19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 RASSF7Q02833 373 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 TYRO3Q06418 890 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 NR5A1Q13285 461 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 MRPS27Q92552 414 aaKnown RBP19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 VPS54Q9P1Q0 977 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 MRVI1Q9Y6F6 885 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 LTBP3Q9NS15 1303 aa19.68■□□□□ 0.74
SHKBP1-216ENST00000598201 NT5C2P49902 561 aa19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 TOB1P50616 345 aaPredicted RBP19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 SAFBQ15424 915 aaKnown RBP eCLIP19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 FOXP1Q9H334 677 aaPredicted RBP19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 KAT14Q9H8E8 782 aa19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 ZNF277Q9NRM2 450 aaPredicted RBP19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 TCP11L1Q9NUJ3 509 aa19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 MYH6P13533 1939 aa19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 PICALMQ13492 652 aa19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 FMR1NBQ8N0W7 255 aaPredicted RBP19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 PNMA1Q8ND90 353 aa19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 RTN4Q9NQC3 1192 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 DDX4Q9NQI0 724 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-216ENST00000598201 NDUFA8P51970 172 aa19.66■□□□□ 0.74
SHKBP1-216ENST00000598201 PODNQ7Z5L7 613 aa19.66■□□□□ 0.74
SHKBP1-216ENST00000598201 ADAMTSL1Q8N6G6 1762 aa19.66■□□□□ 0.74
SHKBP1-216ENST00000598201 MYH1P12882 1939 aa19.66■□□□□ 0.74
SHKBP1-216ENST00000598201 UVSSAQ2YD98 709 aa19.66■□□□□ 0.74
SHKBP1-216ENST00000598201 VEGFAP15692 232 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-216ENST00000598201 PHF20Q9BVI0 1012 aa19.65■□□□□ 0.74
SHKBP1-216ENST00000598201 BAZ2BQ9UIF8 2168 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-216ENST00000598201 FOCADQ5VW36 1801 aa19.65■□□□□ 0.74
SHKBP1-216ENST00000598201 KINO60870 393 aaKnown RBP19.64■□□□□ 0.74
SHKBP1-216ENST00000598201 AOC3Q16853 763 aa19.64■□□□□ 0.74
SHKBP1-216ENST00000598201 STAG2Q8N3U4 1231 aa19.64■□□□□ 0.74
SHKBP1-216ENST00000598201 VPS33BQ9H267 617 aa19.64■□□□□ 0.74
SHKBP1-216ENST00000598201 ZNF287Q9HBT7 754 aa19.64■□□□□ 0.74
SHKBP1-216ENST00000598201 USP40Q9NVE5 1235 aa19.64■□□□□ 0.74
SHKBP1-216ENST00000598201 PPIP5K2O43314 1243 aa19.64■□□□□ 0.73
SHKBP1-216ENST00000598201 ECE2O60344 883 aa19.64■□□□□ 0.73
SHKBP1-216ENST00000598201 PPP6R2O75170 966 aa19.64■□□□□ 0.73
SHKBP1-216ENST00000598201 PRELPP51888 382 aa19.64■□□□□ 0.73
SHKBP1-216ENST00000598201 KIAA2012Q0VF49 1180 aa19.64■□□□□ 0.73
SHKBP1-216ENST00000598201 CCDC178Q5BJE1 867 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms