RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 KIAA1755Q5JYT7 1200 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 ANKRD45Q5TZF3 282 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 DOCK3Q8IZD9 2030 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 SPICE1Q8N0Z3 855 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 OSBP2Q969R2 916 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 SHISA4Q96DD7 197 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 GPATCH3Q96I76 525 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 SEC62Q99442 399 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 TBC1D2Q9BYX2 928 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 EHD4Q9H223 541 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 PORCNQ9H237 461 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 RPAP3Q9H6T3 665 aaPredicted RBP12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 PCDH10Q9P2E7 1040 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 GNRH1P01148 92 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 APPP05067 770 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 VCAM1P19320 739 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 IRX6P78412 446 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 GABPAQ06546 454 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 B4GALNT3Q6L9W6 998 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 POTEEQ6S8J3 1075 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 CERS3Q8IU89 383 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 CCAR1Q8IX12 1150 aaKnown RBP12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 TANGO6Q9C0B7 1094 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 RBPJLQ9UBG7 517 aa12.4□□□□□ -0.42
SHKBP1-210ENST00000595874 HTTP42858 3142 aa12.4□□□□□ -0.43
SHKBP1-210ENST00000595874 PLXNB2O15031 1838 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 GCLCP48506 637 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 CDK8P49336 464 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 UBE3CQ15386 1083 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 ZSCAN25Q6NSZ9 544 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 CTR9Q6PD62 1173 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 CCDC129Q6ZRS4 1044 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 SLAIN1Q8ND83 568 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 GPRC5AQ8NFJ5 357 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 DEFB118Q96PH6 123 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 FSD1Q9BTV5 496 aa12.39□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L15C9J2P7 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L13C9JLJ4 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L11C9JVI0 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L18D6R9N7 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L22D6RA61 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L17D6RBQ6 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L19D6RCP7 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L20D6RJB6 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 RNF113AO15541 343 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 PRDM1O75626 825 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 CNMDO75829 334 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 TFRCP02786 760 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 HOXA7P31268 230 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 ERVK-9P63128 1117 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 ERVK-24P63145 666 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 USP17L24Q0WX57 530 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 PLS1Q14651 629 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 CCL14Q16627 93 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 PRPF38BQ5VTL8 546 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 AMOTL1Q8IY63 956 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 KBTBD3Q8NAB2 608 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 EXOC6Q8TAG9 804 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 DPF3Q92784 378 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 DDRGK1Q96HY6 314 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 STRBPQ96SI9 672 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 BTBD7Q9P203 1132 aa12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 ZBTB47Q9UFB7 747 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-210ENST00000595874 GPAA1O43292 621 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 IGSF3O75054 1194 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 SLC4A3P48751 1232 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 TDO2P48775 406 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 ICA1Q05084 483 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 C12orf60Q5U649 245 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 CATSPERGQ6ZRH7 1159 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 PI4K2BQ8TCG2 481 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 U2AF1L4Q8WU68 220 aaKnown RBP12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 TRIB2Q92519 343 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 EPB41L4AQ9HCS5 686 aaPredicted RBP12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 ATP8A2Q9NTI2 1148 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 MORF4L1Q9UBU8 362 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 GJD2Q9UKL4 321 aa12.37□□□□□ -0.43
SHKBP1-210ENST00000595874 SPDYE16A6NNV3 312 aaPredicted RBP12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 GSG1L2A8MUP6 293 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 EEF2P13639 858 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 MX1P20591 662 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 USP14P54578 494 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 TMEM179Q6ZVK1 233 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 GPR142Q7Z601 462 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 DIS3LQ8TF46 1054 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 APPBP2Q92624 585 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 NUP88Q99567 741 aaPredicted RBP12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 LNPKQ9C0E8 428 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 KIAA1683Q9H0B3 1180 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 ARHGEF10LQ9HCE6 1279 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 GINM1Q9NU53 330 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 SWAP70Q9UH65 585 aa12.36□□□□□ -0.43
SHKBP1-210ENST00000595874 GJA8P48165 433 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 IRF5Q13568 498 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 C16orf86Q6ZW13 317 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 PLEKHH3Q7Z736 793 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 SIAH1Q8IUQ4 282 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 ATG4CQ96DT6 458 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 C12orf42Q96LP6 360 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms