RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PPP4R2Q9NY27 417 aa17.9■□□□□ 0.46
UPF1-202ENST00000594243 FOXP2O15409 715 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 FGAP02671 866 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 AKR1B1P15121 316 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 GUCY1A2P33402 732 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 USP14P54578 494 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 USP17L2Q6R6M4 530 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 STK11IPQ8N1F8 1099 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 PARK7Q99497 189 aaKnown RBP17.89■□□□□ 0.45
UPF1-202ENST00000594243 FEZ1Q99689 392 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 PNMA3Q9UL41 463 aa17.89■□□□□ 0.45
UPF1-202ENST00000594243 SP3Q02447 781 aa17.88■□□□□ 0.45
UPF1-202ENST00000594243 KIAA1683Q9H0B3 1180 aa17.88■□□□□ 0.45
UPF1-202ENST00000594243 KANSL2Q9H9L4 492 aa17.88■□□□□ 0.45
UPF1-202ENST00000594243 ANAPC4Q9UJX5 808 aa17.88■□□□□ 0.45
UPF1-202ENST00000594243 ZMYM6O95789 1325 aa17.88■□□□□ 0.45
UPF1-202ENST00000594243 RASA1P20936 1047 aa17.87■□□□□ 0.45
UPF1-202ENST00000594243 OSBPP22059 807 aa17.87■□□□□ 0.45
UPF1-202ENST00000594243 CHMLP26374 656 aa17.87■□□□□ 0.45
UPF1-202ENST00000594243 TREML2Q5T2D2 321 aa17.87■□□□□ 0.45
UPF1-202ENST00000594243 ARHGEF10LQ9HCE6 1279 aa17.87■□□□□ 0.45
UPF1-202ENST00000594243 EMILIN3Q9NT22 766 aa17.87■□□□□ 0.45
UPF1-202ENST00000594243 CYP2C8P10632 490 aa17.86■□□□□ 0.45
UPF1-202ENST00000594243 C17orf99Q6UX52 265 aa17.86■□□□□ 0.45
UPF1-202ENST00000594243 ACER1Q8TDN7 264 aa17.86■□□□□ 0.45
UPF1-202ENST00000594243 ERO1AQ96HE7 468 aa17.86■□□□□ 0.45
UPF1-202ENST00000594243 C12orf42Q96LP6 360 aa17.86■□□□□ 0.45
UPF1-202ENST00000594243 DSCC1Q9BVC3 393 aa17.86■□□□□ 0.45
UPF1-202ENST00000594243 SH2D4AQ9H788 454 aa17.86■□□□□ 0.45
UPF1-202ENST00000594243 RAD50Q92878 1312 aa17.86■□□□□ 0.45
UPF1-202ENST00000594243 PRDM1O75626 825 aa17.85■□□□□ 0.45
UPF1-202ENST00000594243 HOXA7P31268 230 aaPredicted RBP17.85■□□□□ 0.45
UPF1-202ENST00000594243 ICA1Q05084 483 aa17.85■□□□□ 0.45
UPF1-202ENST00000594243 CTDSPL2Q05D32 466 aa17.85■□□□□ 0.45
UPF1-202ENST00000594243 DGKZQ13574 1117 aa17.85■□□□□ 0.45
UPF1-202ENST00000594243 ARHGEF6Q15052 776 aa17.85■□□□□ 0.45
UPF1-202ENST00000594243 ZYXQ15942 572 aaKnown RBP17.85■□□□□ 0.45
UPF1-202ENST00000594243 SMCR8Q8TEV9 937 aaPredicted RBP17.85■□□□□ 0.45
UPF1-202ENST00000594243 ZNF213O14771 459 aa17.84■□□□□ 0.45
UPF1-202ENST00000594243 TSPY3P0CV98 308 aa17.84■□□□□ 0.45
UPF1-202ENST00000594243 TSPY8P0CW00 308 aa17.84■□□□□ 0.45
UPF1-202ENST00000594243 KIF22Q14807 665 aa17.84■□□□□ 0.45
UPF1-202ENST00000594243 BMP2KLQ5H9B9 411 aa17.84■□□□□ 0.45
UPF1-202ENST00000594243 CTU1Q7Z7A3 348 aaKnown RBP17.84■□□□□ 0.45
UPF1-202ENST00000594243 CPA4Q9UI42 421 aa17.84■□□□□ 0.45
UPF1-202ENST00000594243 CTNNA3Q9UI47 895 aa17.84■□□□□ 0.45
UPF1-202ENST00000594243 TMX2Q9Y320 296 aa17.84■□□□□ 0.45
UPF1-202ENST00000594243 PTPRFP10586 1907 aa17.83■□□□□ 0.44
UPF1-202ENST00000594243 A0A1W2PRG0 241 aa17.83■□□□□ 0.44
UPF1-202ENST00000594243 EEF2P13639 858 aaKnown RBP17.83■□□□□ 0.44
UPF1-202ENST00000594243 IRX3P78415 501 aaPredicted RBP17.83■□□□□ 0.44
UPF1-202ENST00000594243 ATP2B2Q01814 1243 aa17.83■□□□□ 0.44
UPF1-202ENST00000594243 PKN2Q16513 984 aaKnown RBP17.83■□□□□ 0.44
UPF1-202ENST00000594243 SIAH1Q8IUQ4 282 aa17.83■□□□□ 0.44
UPF1-202ENST00000594243 ASCC2Q9H1I8 757 aaPredicted RBP17.83■□□□□ 0.44
UPF1-202ENST00000594243 MYH8P13535 1937 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 LOC285556D6RIA3 1793 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 ADGRA2Q96PE1 1338 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L15C9J2P7 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L13C9JLJ4 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L11C9JVI0 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L18D6R9N7 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L22D6RA61 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L17D6RBQ6 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L19D6RCP7 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L20D6RJB6 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 FGRP09769 529 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 PCP11498 1178 aaKnown RBP17.82■□□□□ 0.44
UPF1-202ENST00000594243 GCLCP48506 637 aaPredicted RBP17.82■□□□□ 0.44
UPF1-202ENST00000594243 TFAP4Q01664 338 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 USP17L24Q0WX57 530 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 PPP4R3BQ5MIZ7 849 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 SKAP1Q86WV1 359 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 NEDD1Q8NHV4 660 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 CD99L2Q8TCZ2 262 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 LPAR1Q92633 364 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.82■□□□□ 0.44
UPF1-202ENST00000594243 NYAP2Q9P242 653 aa17.82■□□□□ 0.44
UPF1-202ENST00000594243 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.82■□□□□ 0.44
UPF1-202ENST00000594243 TSPY2A6NKD2 308 aa17.81■□□□□ 0.44
UPF1-202ENST00000594243 ORC4O43929 436 aa17.81■□□□□ 0.44
UPF1-202ENST00000594243 IMMTQ16891 758 aaKnown RBP17.81■□□□□ 0.44
UPF1-202ENST00000594243 FAM47AQ5JRC9 791 aa17.81■□□□□ 0.44
UPF1-202ENST00000594243 MFSD6Q6ZSS7 791 aa17.81■□□□□ 0.44
UPF1-202ENST00000594243 CLEC10AQ8IUN9 316 aa17.81■□□□□ 0.44
UPF1-202ENST00000594243 RNF41Q9H4P4 317 aaPredicted RBP17.81■□□□□ 0.44
UPF1-202ENST00000594243 VCPKMTQ9H867 229 aa17.81■□□□□ 0.44
UPF1-202ENST00000594243 GOPCQ9HD26 462 aa17.81■□□□□ 0.44
UPF1-202ENST00000594243 TOMM22Q9NS69 142 aa17.81■□□□□ 0.44
UPF1-202ENST00000594243 IGKV6D-41A0A0C4DH26 115 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 SGSM2O43147 1006 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 RANBP6O60518 1105 aaKnown RBP17.8■□□□□ 0.44
UPF1-202ENST00000594243 BCRP11274 1271 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 VCAM1P19320 739 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 NT5C2P49902 561 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 HAND2P61296 217 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 LACTBP83111 547 aaPredicted RBP17.8■□□□□ 0.44
UPF1-202ENST00000594243 AKNAD1Q5T1N1 836 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 CATSPERGQ6ZRH7 1159 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 GTF3C2Q8WUA4 911 aaPredicted RBP17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms