RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 ZSCAN22P10073 491 aaPredicted RBP24.26■■□□□ 1.47
PNKP-203ENST00000593946 TATDN1Q6P1N9 297 aa24.26■■□□□ 1.47
PNKP-203ENST00000593946 SAMD7Q7Z3H4 446 aa24.26■■□□□ 1.47
PNKP-203ENST00000593946 CCDC17Q96LX7 622 aa24.26■■□□□ 1.47
PNKP-203ENST00000593946 KAT14Q9H8E8 782 aa24.26■■□□□ 1.47
PNKP-203ENST00000593946 IGKV6D-41A0A0C4DH26 115 aa24.25■■□□□ 1.47
PNKP-203ENST00000593946 PPFIA3O75145 1194 aa24.25■■□□□ 1.47
PNKP-203ENST00000593946 CEP95Q96GE4 821 aa24.25■■□□□ 1.47
PNKP-203ENST00000593946 GPRC5DQ9NZD1 345 aa24.25■■□□□ 1.47
PNKP-203ENST00000593946 FAM196BA6NMK8 535 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 IFNAR1P17181 557 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 KIF4BQ2VIQ3 1234 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 TBC1D10BQ4KMP7 808 aaPredicted RBP24.24■■□□□ 1.47
PNKP-203ENST00000593946 RBM26Q5T8P6 1007 aaKnown RBP24.24■■□□□ 1.47
PNKP-203ENST00000593946 FOXD4L5Q5VV16 416 aaPredicted RBP24.24■■□□□ 1.47
PNKP-203ENST00000593946 PNMA1Q8ND90 353 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 FOXD4L4Q8WXT5 416 aaPredicted RBP24.24■■□□□ 1.47
PNKP-203ENST00000593946 ORC3Q9UBD5 711 aaPredicted RBP24.24■■□□□ 1.47
PNKP-203ENST00000593946 STX8Q9UNK0 236 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 H7C1D1 291 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 GBP4Q96PP9 640 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 TMEM47Q9BQJ4 181 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 TRIM34Q9BYJ4 488 aa24.24■■□□□ 1.47
PNKP-203ENST00000593946 HERC5Q9UII4 1024 aaKnown RBP24.24■■□□□ 1.47
PNKP-203ENST00000593946 VPS37CA5D8V6 355 aaPredicted RBP24.23■■□□□ 1.47
PNKP-203ENST00000593946 C9orf131Q5VYM1 1079 aa24.23■■□□□ 1.47
PNKP-203ENST00000593946 MAP3K14Q99558 947 aa24.23■■□□□ 1.47
PNKP-203ENST00000593946 TMEM39BQ9GZU3 492 aa24.23■■□□□ 1.47
PNKP-203ENST00000593946 RBM28Q9NW13 759 aaKnown RBP24.23■■□□□ 1.47
PNKP-203ENST00000593946 MTMR4Q9NYA4 1195 aa24.23■■□□□ 1.47
PNKP-203ENST00000593946 PGAP2Q9UHJ9 254 aa24.23■■□□□ 1.47
PNKP-203ENST00000593946 STK36Q9NRP7 1315 aa24.22■■□□□ 1.47
PNKP-203ENST00000593946 F13A1P00488 732 aa24.22■■□□□ 1.47
PNKP-203ENST00000593946 CDC37L1Q7L3B6 337 aa24.22■■□□□ 1.47
PNKP-203ENST00000593946 PHKBQ93100 1093 aa24.22■■□□□ 1.47
PNKP-203ENST00000593946 BAG4O95429 457 aaKnown RBP24.21■■□□□ 1.47
PNKP-203ENST00000593946 TNNI2P48788 182 aa24.21■■□□□ 1.47
PNKP-203ENST00000593946 TNFAIP1Q13829 316 aa24.21■■□□□ 1.47
PNKP-203ENST00000593946 CERKLQ49MI3 558 aaPredicted RBP24.21■■□□□ 1.47
PNKP-203ENST00000593946 FMNL1O95466 1100 aaPredicted RBP24.21■■□□□ 1.47
PNKP-203ENST00000593946 TOP1P11387 765 aaKnown RBP24.21■■□□□ 1.47
PNKP-203ENST00000593946 MCM4P33991 863 aa24.21■■□□□ 1.47
PNKP-203ENST00000593946 NBPF11Q86T75 865 aa24.21■■□□□ 1.47
PNKP-203ENST00000593946 MYH15Q9Y2K3 1946 aa24.2■■□□□ 1.47
PNKP-203ENST00000593946 BAZ2BQ9UIF8 2168 aaKnown RBP24.2■■□□□ 1.47
PNKP-203ENST00000593946 SOCS7O14512 581 aa24.2■■□□□ 1.46
PNKP-203ENST00000593946 GPR162Q16538 588 aa24.2■■□□□ 1.46
PNKP-203ENST00000593946 CTCFLQ8NI51 663 aaPredicted RBP24.2■■□□□ 1.46
PNKP-203ENST00000593946 ASTN2O75129 1339 aaPredicted RBP24.2■■□□□ 1.46
PNKP-203ENST00000593946 DDNO94850 711 aaPredicted RBP24.19■■□□□ 1.46
PNKP-203ENST00000593946 SSRP1Q08945 709 aaKnown RBP24.19■■□□□ 1.46
PNKP-203ENST00000593946 FUT2Q10981 343 aa24.19■■□□□ 1.46
PNKP-203ENST00000593946 RASA3Q14644 834 aa24.19■■□□□ 1.46
PNKP-203ENST00000593946 TMTC3Q6ZXV5 915 aa24.19■■□□□ 1.46
PNKP-203ENST00000593946 CDAN1Q8IWY9 1227 aa24.19■■□□□ 1.46
PNKP-203ENST00000593946 HACL1Q9UJ83 578 aa24.19■■□□□ 1.46
PNKP-203ENST00000593946 POLR2AP24928 1970 aaKnown RBP24.19■■□□□ 1.46
PNKP-203ENST00000593946 MPHOSPH10O00566 681 aaKnown RBP24.18■■□□□ 1.46
PNKP-203ENST00000593946 TBC1D12O60347 775 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 TRPM4Q8TD43 1214 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 SLC26A6Q9BXS9 759 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.18■■□□□ 1.46
PNKP-203ENST00000593946 H3BQV1 296 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 PLEKHA8P1O95397 391 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 TTLL1O95922 423 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 KIF5BP33176 963 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 EPS15P42566 896 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 GRM4Q14833 912 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 PPP4R3BQ5MIZ7 849 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 IFFO2Q5TF58 517 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 CLEC10AQ8IUN9 316 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 CMTR1Q8N1G2 835 aaKnown RBP24.18■■□□□ 1.46
PNKP-203ENST00000593946 RGS22Q8NE09 1264 aa24.18■■□□□ 1.46
PNKP-203ENST00000593946 ATAD5Q96QE3 1844 aa24.17■■□□□ 1.46
PNKP-203ENST00000593946 MAP3K10Q02779 954 aa24.17■■□□□ 1.46
PNKP-203ENST00000593946 NBR1Q14596 966 aa24.17■■□□□ 1.46
PNKP-203ENST00000593946 TRIM22Q8IYM9 498 aa24.17■■□□□ 1.46
PNKP-203ENST00000593946 TEPSINQ96N21 525 aa24.17■■□□□ 1.46
PNKP-203ENST00000593946 RNF26Q9BY78 433 aaPredicted RBP24.17■■□□□ 1.46
PNKP-203ENST00000593946 GRIN3BO60391 1043 aa24.16■■□□□ 1.46
PNKP-203ENST00000593946 ABCB5Q2M3G0 1257 aa24.16■■□□□ 1.46
PNKP-203ENST00000593946 SHROOM1Q2M3G4 852 aaPredicted RBP24.16■■□□□ 1.46
PNKP-203ENST00000593946 TMEM179Q6ZVK1 233 aa24.16■■□□□ 1.46
PNKP-203ENST00000593946 CCDC82Q8N4S0 544 aa24.16■■□□□ 1.46
PNKP-203ENST00000593946 C8orf76Q96K31 380 aa24.16■■□□□ 1.46
PNKP-203ENST00000593946 ATP6V1DQ9Y5K8 247 aa24.16■■□□□ 1.46
PNKP-203ENST00000593946 FOSBP53539 338 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 RRP1BQ14684 758 aaKnown RBP24.15■■□□□ 1.46
PNKP-203ENST00000593946 FBXO18Q8NFZ0 1043 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 ALG1Q9BT22 464 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 MAD2L2Q9UI95 211 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 SCAF8Q9UPN6 1271 aaKnown RBP24.15■■□□□ 1.46
PNKP-203ENST00000593946 CNTNAP5Q8WYK1 1306 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 GDF11O95390 407 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 GUCY1A2P33402 732 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 SRBD1Q8N5C6 995 aaKnown RBP24.15■■□□□ 1.46
PNKP-203ENST00000593946 WASF1Q92558 559 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 AIFM3Q96NN9 605 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 KANSL2Q9H9L4 492 aa24.15■■□□□ 1.46
PNKP-203ENST00000593946 CLIP2Q9UDT6 1046 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms