RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 HOXA7P31268 230 aaPredicted RBP12.71□□□□□ -0.37
VPS4B-207ENST00000591519 HMGCS2P54868 508 aa12.71□□□□□ -0.37
VPS4B-207ENST00000591519 BACE1P56817 501 aa12.71□□□□□ -0.37
VPS4B-207ENST00000591519 CEP85Q6P2H3 762 aa12.71□□□□□ -0.37
VPS4B-207ENST00000591519 CERS3Q8IU89 383 aa12.71□□□□□ -0.37
VPS4B-207ENST00000591519 HS6ST3Q8IZP7 471 aa12.71□□□□□ -0.37
VPS4B-207ENST00000591519 CCDC8Q9H0W5 538 aaPredicted RBP12.71□□□□□ -0.37
VPS4B-207ENST00000591519 DNAJC18Q9H819 358 aa12.71□□□□□ -0.37
VPS4B-207ENST00000591519 JAG1P78504 1218 aa12.7□□□□□ -0.38
VPS4B-207ENST00000591519 ERC1Q8IUD2 1116 aa12.7□□□□□ -0.38
VPS4B-207ENST00000591519 MAPKAPK5Q8IW41 473 aa12.7□□□□□ -0.38
VPS4B-207ENST00000591519 COA7Q96BR5 231 aa12.7□□□□□ -0.38
VPS4B-207ENST00000591519 ASCC2Q9H1I8 757 aaPredicted RBP12.7□□□□□ -0.38
VPS4B-207ENST00000591519 TLR7Q9NYK1 1049 aaKnown RBP12.7□□□□□ -0.38
VPS4B-207ENST00000591519 BIN2Q9UBW5 565 aaPredicted RBP12.7□□□□□ -0.38
VPS4B-207ENST00000591519 PALD1Q9ULE6 856 aa12.7□□□□□ -0.38
VPS4B-207ENST00000591519 MYO5AQ9Y4I1 1855 aaKnown RBP12.7□□□□□ -0.38
VPS4B-207ENST00000591519 SIPA1L1O43166 1804 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 ATAD5Q96QE3 1844 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 LOC285556D6RIA3 1793 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 CYP7A1P22680 504 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 U2AF1L4Q8WU68 220 aaKnown RBP12.69□□□□□ -0.38
VPS4B-207ENST00000591519 UNC93B1Q9H1C4 597 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 MORF4L1Q9UBU8 362 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 GJD2Q9UKL4 321 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 CDK5RAP2Q96SN8 1893 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 FOCADQ5VW36 1801 aa12.69□□□□□ -0.38
VPS4B-207ENST00000591519 USP17L10C9JJH3 530 aa12.68□□□□□ -0.38
VPS4B-207ENST00000591519 H0YGN5 161 aa12.68□□□□□ -0.38
VPS4B-207ENST00000591519 INHAP05111 366 aa12.68□□□□□ -0.38
VPS4B-207ENST00000591519 ELNP15502 786 aa12.68□□□□□ -0.38
VPS4B-207ENST00000591519 DYNLL1P63167 89 aaKnown RBP12.68□□□□□ -0.38
VPS4B-207ENST00000591519 HSP90AB4PQ58FF6 505 aa12.68□□□□□ -0.38
VPS4B-207ENST00000591519 TATDN1Q6P1N9 297 aa12.68□□□□□ -0.38
VPS4B-207ENST00000591519 CRISPLD2Q9H0B8 497 aa12.68□□□□□ -0.38
VPS4B-207ENST00000591519 PAK6Q9NQU5 681 aaPredicted RBP12.68□□□□□ -0.38
VPS4B-207ENST00000591519 MAST2Q6P0Q8 1798 aa12.68□□□□□ -0.38
VPS4B-207ENST00000591519 IDH1O75874 414 aaKnown RBP12.67□□□□□ -0.38
VPS4B-207ENST00000591519 HLA-DOAP06340 250 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 MS4A1P11836 297 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 PBX2P40425 430 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 MAP3K12Q12852 859 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 MTMR2Q13614 643 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 RPAP2Q8IXW5 612 aaPredicted RBP12.67□□□□□ -0.38
VPS4B-207ENST00000591519 CRACR2BQ8N4Y2 399 aaPredicted RBP12.67□□□□□ -0.38
VPS4B-207ENST00000591519 PANK1Q8TE04 598 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 DPF3Q92784 378 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 P2RX7Q99572 595 aaKnown RBP12.67□□□□□ -0.38
VPS4B-207ENST00000591519 HTATIP2Q9BUP3 242 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 EHD4Q9H223 541 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 ANTXR1Q9H6X2 564 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 TMOD4Q9NZQ9 345 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 ZBTB21Q9ULJ3 1066 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 EXOC6BQ9Y2D4 811 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 CEP290O15078 2479 aa12.67□□□□□ -0.38
VPS4B-207ENST00000591519 FXR1P51114 621 aaKnown RBP eCLIP12.66□□□□□ -0.38
VPS4B-207ENST00000591519 TTC6Q86TZ1 520 aa12.66□□□□□ -0.38
VPS4B-207ENST00000591519 AACSQ86V21 672 aa12.66□□□□□ -0.38
VPS4B-207ENST00000591519 MAGEB6Q8N7X4 407 aa12.66□□□□□ -0.38
VPS4B-207ENST00000591519 RHPN1Q8TCX5 695 aa12.66□□□□□ -0.38
VPS4B-207ENST00000591519 TRIM34Q9BYJ4 488 aa12.66□□□□□ -0.38
VPS4B-207ENST00000591519 RBPJLQ9UBG7 517 aa12.66□□□□□ -0.38
VPS4B-207ENST00000591519 SAP30BPQ9UHR5 308 aaKnown RBP12.66□□□□□ -0.38
VPS4B-207ENST00000591519 SERPINB13Q9UIV8 391 aa12.66□□□□□ -0.38
VPS4B-207ENST00000591519 FARP2O94887 1054 aaPredicted RBP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 TFRCP02786 760 aaKnown RBP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 XRCC5P13010 732 aaKnown RBP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 USP5P45974 858 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 HERVK_113P62684 666 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 IRX3P78415 501 aaPredicted RBP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 TTF1Q15361 905 aaPredicted RBP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 SHROOM1Q2M3G4 852 aaPredicted RBP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 USP17L2Q6R6M4 530 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 PLPP6Q8IY26 295 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 MIGA1Q8NAN2 632 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 GPRC5AQ8NFJ5 357 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 GTF3C2Q8WUA4 911 aaPredicted RBP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 C12orf42Q96LP6 360 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 DEFB118Q96PH6 123 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 RIOK1Q9BRS2 568 aaKnown RBP12.65□□□□□ -0.38
VPS4B-207ENST00000591519 TXNRD2Q9NNW7 524 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 EMILIN3Q9NT22 766 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 ZBTB40Q9NUA8 1239 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 NDUFB9Q9Y6M9 179 aa12.65□□□□□ -0.38
VPS4B-207ENST00000591519 GDF11O95390 407 aa12.64□□□□□ -0.39
VPS4B-207ENST00000591519 GH2P01242 217 aa12.64□□□□□ -0.39
VPS4B-207ENST00000591519 HMGCRP04035 888 aa12.64□□□□□ -0.39
VPS4B-207ENST00000591519 Q3C1V9 767 aa12.64□□□□□ -0.39
VPS4B-207ENST00000591519 SIRT2Q8IXJ6 389 aa12.64□□□□□ -0.39
VPS4B-207ENST00000591519 CLASRPQ8N2M8 674 aaKnown RBP12.64□□□□□ -0.39
VPS4B-207ENST00000591519 KIF1BPQ96EK5 621 aa12.64□□□□□ -0.39
VPS4B-207ENST00000591519 NR2E3Q9Y5X4 410 aa12.64□□□□□ -0.39
VPS4B-207ENST00000591519 MYH1P12882 1939 aa12.64□□□□□ -0.39
VPS4B-207ENST00000591519 RPTORQ8N122 1335 aa12.63□□□□□ -0.39
VPS4B-207ENST00000591519 GABPAQ06546 454 aa12.63□□□□□ -0.39
VPS4B-207ENST00000591519 DSG2Q14126 1118 aa12.63□□□□□ -0.39
VPS4B-207ENST00000591519 ANKLE1Q8NAG6 615 aa12.63□□□□□ -0.39
VPS4B-207ENST00000591519 USP6NLQ92738 828 aa12.63□□□□□ -0.39
VPS4B-207ENST00000591519 KIAA1683Q9H0B3 1180 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms