RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MRPS27Q92552 414 aaKnown RBP16.38■□□□□ 0.21
LIG3-205ENST00000585941 IL17RBQ9NRM6 502 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 PCDHA7Q9UN72 937 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 MYH8P13535 1937 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 MYO3BQ8WXR4 1341 aa16.38■□□□□ 0.21
LIG3-205ENST00000585941 USP17L3A6NCW0 530 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 USP17L4A6NCW7 530 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 ECE2O60344 883 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 SLC4A8Q2Y0W8 1093 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 USP17L1Q7RTZ2 530 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 ZDHHC15Q96MV8 337 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 LZTS2Q9BRK4 669 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 DBNDD1Q9H9R9 158 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 BRMS1Q9HCU9 246 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 USP40Q9NVE5 1235 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 SWAP70Q9UH65 585 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 V9GY48 417 aaPredicted RBP16.37■□□□□ 0.21
LIG3-205ENST00000585941 SNED1Q8TER0 1413 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 CNTNAP5Q8WYK1 1306 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 F8W031 263 aaPredicted RBP16.37■□□□□ 0.21
LIG3-205ENST00000585941 KINO60870 393 aaKnown RBP16.37■□□□□ 0.21
LIG3-205ENST00000585941 PLEKHA8P1O95397 391 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 GRM4Q14833 912 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 PKN1Q16512 942 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 CCDC125Q86Z20 511 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 RTKN2Q8IZC4 609 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 FAM177A1Q8N128 213 aaPredicted RBP16.37■□□□□ 0.21
LIG3-205ENST00000585941 CMTR1Q8N1G2 835 aaKnown RBP16.37■□□□□ 0.21
LIG3-205ENST00000585941 FSIP1Q8NA03 581 aa16.37■□□□□ 0.21
LIG3-205ENST00000585941 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.37■□□□□ 0.21
LIG3-205ENST00000585941 ZNF646O15015 1829 aaPredicted RBP16.36■□□□□ 0.21
LIG3-205ENST00000585941 PLIN4Q96Q06 1357 aa16.36■□□□□ 0.21
LIG3-205ENST00000585941 WDHD1O75717 1129 aaPredicted RBP16.36■□□□□ 0.21
LIG3-205ENST00000585941 CAVIN2O95810 425 aa16.36■□□□□ 0.21
LIG3-205ENST00000585941 CRKP46108 304 aa16.36■□□□□ 0.21
LIG3-205ENST00000585941 DACT2Q5SW24 774 aa16.36■□□□□ 0.21
LIG3-205ENST00000585941 TTLL6Q8N841 843 aa16.36■□□□□ 0.21
LIG3-205ENST00000585941 ENGASEQ8NFI3 743 aa16.36■□□□□ 0.21
LIG3-205ENST00000585941 PHF20Q9BVI0 1012 aa16.36■□□□□ 0.21
LIG3-205ENST00000585941 CEP131Q9UPN4 1083 aa16.36■□□□□ 0.21
LIG3-205ENST00000585941 SCN9AQ15858 1988 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 KIF13BQ9NQT8 1826 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 BTBD18B2RXH4 712 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 CMA1P23946 247 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 KRT2P35908 639 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 CCDC93Q567U6 631 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 CDC42EP5Q6NZY7 148 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 SRBD1Q8N5C6 995 aaKnown RBP16.35■□□□□ 0.21
LIG3-205ENST00000585941 SLC44A5Q8NCS7 719 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 VPS33BQ9H267 617 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 KCNJ14Q9UNX9 436 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 MORC2Q9Y6X9 1032 aaPredicted RBP16.35■□□□□ 0.21
LIG3-205ENST00000585941 PSME4Q14997 1843 aa16.35■□□□□ 0.21
LIG3-205ENST00000585941 UBE2Q2LH0YL09 131 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 NPM3O75607 178 aaKnown RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 HLA-DOAP06340 250 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 SCG2P13521 617 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 NOVP48745 357 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 SCNN1DP51172 638 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 GABPAQ06546 454 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 SNW1Q13573 536 aaKnown RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 CAMK4Q16566 473 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 PFKFB3Q16875 520 aaPredicted RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 PPP4R3BQ5MIZ7 849 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 APOBEC3HQ6NTF7 200 aaKnown RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 SASS6Q6UVJ0 657 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 DEFB132Q7Z7B7 95 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 SH3GLB2Q9NR46 395 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 SERPINA10Q9UK55 444 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 TOP1P11387 765 aaKnown RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 PICALMQ13492 652 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 PTPAQ15257 358 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 SOGA3Q5TF21 947 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 FMR1NBQ8N0W7 255 aaPredicted RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 RNF214Q8ND24 703 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 TRIM44Q96DX7 344 aaPredicted RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 PSMD1Q99460 953 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 TMEM47Q9BQJ4 181 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 MXD3Q9BW11 206 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 OSBPL5Q9H0X9 879 aaPredicted RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 EHD4Q9H223 541 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 DHX36Q9H2U1 1008 aaKnown RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 GOLPH3LQ9H4A5 285 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 ZNF219Q9P2Y4 722 aaPredicted RBP16.34■□□□□ 0.21
LIG3-205ENST00000585941 SERPINB13Q9UIV8 391 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 STX8Q9UNK0 236 aa16.34■□□□□ 0.21
LIG3-205ENST00000585941 CUTAO60888 179 aa16.33■□□□□ 0.2
LIG3-205ENST00000585941 BMP15O95972 392 aa16.33■□□□□ 0.2
LIG3-205ENST00000585941 CALML3P27482 149 aa16.33■□□□□ 0.2
LIG3-205ENST00000585941 SMARCA1P28370 1054 aa16.33■□□□□ 0.2
LIG3-205ENST00000585941 TYRO3Q06418 890 aa16.33■□□□□ 0.2
LIG3-205ENST00000585941 AOC3Q16853 763 aa16.33■□□□□ 0.2
LIG3-205ENST00000585941 AXDND1Q5T1B0 1012 aaPredicted RBP16.33■□□□□ 0.2
LIG3-205ENST00000585941 VPS54Q9P1Q0 977 aa16.33■□□□□ 0.2
LIG3-205ENST00000585941 PPIP5K2O43314 1243 aa16.32■□□□□ 0.2
LIG3-205ENST00000585941 PDLIM2Q96JY6 352 aa16.32■□□□□ 0.2
LIG3-205ENST00000585941 IDI2Q9BXS1 227 aa16.32■□□□□ 0.2
LIG3-205ENST00000585941 NOL7Q9UMY1 257 aaKnown RBP16.32■□□□□ 0.2
LIG3-205ENST00000585941 ADAMTSL1Q8N6G6 1762 aa16.32■□□□□ 0.2
LIG3-205ENST00000585941 FAM237AA0A1B0GTK4 181 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms