RNA–Protein interactions for RNA: ENST00000583965.5

CDRT1-207, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best) BASIC

Gene CDRT1, Length 562 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-207ENST00000583965 DGKHQ86XP1 1220 aa13.71□□□□□ -0.21
CDRT1-207ENST00000583965 TMTC2Q8N394 836 aa13.71□□□□□ -0.21
CDRT1-207ENST00000583965 NKX2-3Q8TAU0 364 aa13.71□□□□□ -0.21
CDRT1-207ENST00000583965 ZKSCAN4Q969J2 545 aaPredicted RBP13.71□□□□□ -0.21
CDRT1-207ENST00000583965 ALDH8A1Q9H2A2 487 aaPredicted RBP13.71□□□□□ -0.21
CDRT1-207ENST00000583965 IL17RBQ9NRM6 502 aa13.71□□□□□ -0.21
CDRT1-207ENST00000583965 MTMR4Q9NYA4 1195 aa13.71□□□□□ -0.21
CDRT1-207ENST00000583965 NYAP2Q9P242 653 aa13.71□□□□□ -0.21
CDRT1-207ENST00000583965 SYNPO2Q9UMS6 1093 aa13.71□□□□□ -0.21
CDRT1-207ENST00000583965 SNCAIPQ9Y6H5 919 aa13.71□□□□□ -0.21
CDRT1-207ENST00000583965 TNKSO95271 1327 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 TMEM88BA6NKF7 163 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 UBE2Q2LH0YL09 131 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 IFIT3O14879 490 aaKnown RBP13.7□□□□□ -0.22
CDRT1-207ENST00000583965 TTLL1O95922 423 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 PTPRAP18433 802 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 ANP32AP39687 249 aaKnown RBP13.7□□□□□ -0.22
CDRT1-207ENST00000583965 LIFRP42702 1097 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 NEK4P51957 841 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 JAG1P78504 1218 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 ICA1Q05084 483 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 RAB3GAP1Q15042 981 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 SEC23AQ15436 765 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 ERO1BQ86YB8 467 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 IGDCC4Q8TDY8 1250 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 ANKS1AQ92625 1134 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 CEP95Q96GE4 821 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 AGXT2Q9BYV1 514 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 UPF3BQ9BZI7 483 aaKnown RBP13.7□□□□□ -0.22
CDRT1-207ENST00000583965 AS3MTQ9HBK9 375 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 ARHGEF10LQ9HCE6 1279 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 PDRG1Q9NUG6 133 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 LOC285556D6RIA3 1793 aa13.7□□□□□ -0.22
CDRT1-207ENST00000583965 NMT2O60551 498 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 CPA1P15085 419 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 FGD1P98174 961 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 PPATQ06203 517 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 COL9A3Q14050 684 aaPredicted RBP13.69□□□□□ -0.22
CDRT1-207ENST00000583965 WTAPQ15007 396 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 ANKRD1Q15327 319 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 SHROOM1Q2M3G4 852 aaPredicted RBP13.69□□□□□ -0.22
CDRT1-207ENST00000583965 TMEM67Q5HYA8 995 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 IFIT1BQ5T764 474 aaKnown RBP13.69□□□□□ -0.22
CDRT1-207ENST00000583965 CHST3Q7LGC8 479 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 ENAHQ8N8S7 591 aaPredicted RBP13.69□□□□□ -0.22
CDRT1-207ENST00000583965 MKL1Q969V6 931 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 SLC10A4Q96EP9 437 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 HHIPL1Q96JK4 782 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 ZKSCAN3Q9BRR0 538 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 WDR18Q9BV38 432 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 SH2D4AQ9H788 454 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 TLL2Q9Y6L7 1015 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 PARP14Q460N5 1801 aa13.69□□□□□ -0.22
CDRT1-207ENST00000583965 SPDYE5A6NIY4 337 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 SH2B2O14492 632 aaPredicted RBP13.68□□□□□ -0.22
CDRT1-207ENST00000583965 ST18O60284 1047 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 TOP1P11387 765 aaKnown RBP13.68□□□□□ -0.22
CDRT1-207ENST00000583965 EEF2P13639 858 aaKnown RBP13.68□□□□□ -0.22
CDRT1-207ENST00000583965 HUNKP57058 714 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 RCSD1Q6JBY9 416 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 Q6ZUG5 572 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 SAPCD2Q86UD0 394 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 CLMNQ96JQ2 1002 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 ELP3Q9H9T3 547 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 LY9Q9HBG7 655 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 STX8Q9UNK0 236 aa13.68□□□□□ -0.22
CDRT1-207ENST00000583965 APLP1P51693 650 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 PPIL2Q13356 520 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 SGMS1Q86VZ5 419 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 ZNF280CQ8ND82 737 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 TCEANC2Q96MN5 208 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 LRRC2Q9BYS8 371 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 KAT14Q9H8E8 782 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 CREBZFQ9NS37 354 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 CLIP2Q9UDT6 1046 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 TMX2Q9Y320 296 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 AFG3L2Q9Y4W6 797 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 ZHX2Q9Y6X8 837 aa13.67□□□□□ -0.22
CDRT1-207ENST00000583965 CCDC69A6NI79 296 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 C19orf81C9J6K1 198 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 USP17L10C9JJH3 530 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 USP14P54578 494 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 ATP2B2Q01814 1243 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 TOB2Q14106 344 aaPredicted RBP13.66□□□□□ -0.22
CDRT1-207ENST00000583965 NFXL1Q6ZNB6 911 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 CLEC10AQ8IUN9 316 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 SIAH1Q8IUQ4 282 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 BRF1Q92994 677 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 OPTNQ96CV9 577 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 TMEM47Q9BQJ4 181 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 KIAA1683Q9H0B3 1180 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 GOPCQ9HD26 462 aa13.66□□□□□ -0.22
CDRT1-207ENST00000583965 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.66□□□□□ -0.22
CDRT1-207ENST00000583965 BAZ2BQ9UIF8 2168 aaKnown RBP13.65□□□□□ -0.22
CDRT1-207ENST00000583965 CXCL11O14625 94 aa13.65□□□□□ -0.22
CDRT1-207ENST00000583965 CALM1P0DP23 149 aa13.65□□□□□ -0.22
CDRT1-207ENST00000583965 CALM2P0DP24 149 aa13.65□□□□□ -0.22
CDRT1-207ENST00000583965 CALM3P0DP25 149 aa13.65□□□□□ -0.22
CDRT1-207ENST00000583965 ZBTB48P10074 688 aaPredicted RBP13.65□□□□□ -0.22
CDRT1-207ENST00000583965 MCM2P49736 904 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms