RNA–Protein interactions for RNA: ENST00000578600.1

PTPRM-208, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-208ENST00000578600 NBPF6Q5VWK0 638 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 REXO1Q8N1G1 1221 aaKnown RBP7.8□□□□□ -1.16
PTPRM-208ENST00000578600 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.8□□□□□ -1.16
PTPRM-208ENST00000578600 DCAF11Q8TEB1 546 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 ANAPC16Q96DE5 110 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 NBPF4Q96M43 638 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 PUS7Q96PZ0 661 aaKnown RBP7.8□□□□□ -1.16
PTPRM-208ENST00000578600 PLVAPQ9BX97 442 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 TRIM55Q9BYV6 548 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 C19orf44Q9H6X5 657 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 ZNF408Q9H9D4 720 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 BRMS1Q9HCU9 246 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 PCDHA4Q9UN74 947 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 POLR3KQ9Y2Y1 108 aaPredicted RBP7.8□□□□□ -1.16
PTPRM-208ENST00000578600 PCDHGC5Q9Y5F6 944 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 ALKQ9UM73 1620 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 ARHGAP23Q9P227 1491 aa7.8□□□□□ -1.16
PTPRM-208ENST00000578600 SYNGAP1Q96PV0 1343 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 ZNF644Q9H582 1327 aaPredicted RBP7.79□□□□□ -1.16
PTPRM-208ENST00000578600 CEP162Q5TB80 1403 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 GNB5O14775 395 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 U2SURPO15042 1029 aaKnown RBP7.79□□□□□ -1.16
PTPRM-208ENST00000578600 BPNT1O95861 308 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 HSP90B1P14625 803 aaKnown RBP7.79□□□□□ -1.16
PTPRM-208ENST00000578600 MCM4P33991 863 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 RAC1P63000 192 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 INPP5AQ14642 412 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 BMS1Q14692 1282 aaKnown RBP7.79□□□□□ -1.16
PTPRM-208ENST00000578600 NFE2L2Q16236 605 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 UBASH3BQ8TF42 649 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 LRRC59Q96AG4 307 aaKnown RBP7.79□□□□□ -1.16
PTPRM-208ENST00000578600 SRRTQ9BXP5 876 aaKnown RBP7.79□□□□□ -1.16
PTPRM-208ENST00000578600 SNCAIPQ9Y6H5 919 aa7.79□□□□□ -1.16
PTPRM-208ENST00000578600 NKTRP30414 1462 aaKnown RBP7.79□□□□□ -1.16
PTPRM-208ENST00000578600 CDC42BPAQ5VT25 1732 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 ATE1O95260 518 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 WISP1O95388 367 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 ZNF165P49910 485 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 CLCQ05315 142 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 PDE3AQ14432 1141 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 LRFN4Q6PJG9 635 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 CYFIP1Q7L576 1253 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 ACSBG1Q96GR2 724 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 MRFAP1L1Q96HT8 127 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 SHDQ96IW2 340 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 WDR18Q9BV38 432 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 TMPRSS13Q9BYE2 586 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 EHMT1Q9H9B1 1298 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 MKL2Q9ULH7 1088 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 PPT2Q9UMR5 302 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 ERVK-7P63135 1459 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 PRR36Q9H6K5 1346 aa7.78□□□□□ -1.16
PTPRM-208ENST00000578600 MEGF11A6BM72 1044 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 AOC2O75106 756 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 ETFBP38117 255 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 DUOXA2Q1HG44 320 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 ZC3H12AQ5D1E8 599 aaKnown RBP7.77□□□□□ -1.17
PTPRM-208ENST00000578600 EXOSC6Q5RKV6 272 aaKnown RBP7.77□□□□□ -1.17
PTPRM-208ENST00000578600 HP1BP3Q5SSJ5 553 aaPredicted RBP7.77□□□□□ -1.17
PTPRM-208ENST00000578600 FBXW10Q5XX13 1052 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 KIAA1211Q6ZU35 1233 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 ANKS3Q6ZW76 656 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 PLPPR2Q96GM1 343 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 FERD3LQ96RJ6 166 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 CRBNQ96SW2 442 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 PIF1Q9H611 641 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 TBX22Q9Y458 520 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 TACC3Q9Y6A5 838 aa7.77□□□□□ -1.17
PTPRM-208ENST00000578600 PRDM15P57071 1507 aaPredicted RBP7.77□□□□□ -1.17
PTPRM-208ENST00000578600 TLDC2A0PJX2 215 aa7.76□□□□□ -1.17
PTPRM-208ENST00000578600 RING1Q06587 406 aa7.76□□□□□ -1.17
PTPRM-208ENST00000578600 TRIM28Q13263 835 aaKnown RBP7.76□□□□□ -1.17
PTPRM-208ENST00000578600 WIPI1Q5MNZ9 446 aaPredicted RBP7.76□□□□□ -1.17
PTPRM-208ENST00000578600 ZNRF3Q9ULT6 936 aa7.76□□□□□ -1.17
PTPRM-208ENST00000578600 NCOA2Q15596 1464 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 PIK3R4Q99570 1358 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 SPDYE3A6NKU9 549 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 FAM229AH3BQW9 127 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 K7ELQ4 463 aaPredicted RBP7.75□□□□□ -1.17
PTPRM-208ENST00000578600 PIK3R2O00459 728 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 ELNP15502 786 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 GIPRP48546 466 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 EIF6P56537 245 aaKnown RBP7.75□□□□□ -1.17
PTPRM-208ENST00000578600 HNRNPUQ00839 825 aaKnown RBP eCLIP7.75□□□□□ -1.17
PTPRM-208ENST00000578600 TNNI3KQ59H18 835 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 IGF2-ASQ6U949 168 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 CCDC81Q6ZN84 652 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 GK5Q6ZS86 529 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 HDXQ7Z353 690 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 RBBP8NLQ8NC74 664 aaPredicted RBP7.75□□□□□ -1.17
PTPRM-208ENST00000578600 SLC26A8Q96RN1 970 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 PRKAG3Q9UGI9 489 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 PCDHB14Q9Y5E9 798 aa7.75□□□□□ -1.17
PTPRM-208ENST00000578600 ZC3H13Q5T200 1668 aaKnown RBP7.75□□□□□ -1.17
PTPRM-208ENST00000578600 EHBP1L1Q8N3D4 1523 aa7.74□□□□□ -1.17
PTPRM-208ENST00000578600 GRIN3BO60391 1043 aa7.74□□□□□ -1.17
PTPRM-208ENST00000578600 SLFN14P0C7P3 912 aa7.74□□□□□ -1.17
PTPRM-208ENST00000578600 IDI1Q13907 227 aa7.74□□□□□ -1.17
PTPRM-208ENST00000578600 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.74□□□□□ -1.17
PTPRM-208ENST00000578600 RUSC1Q9BVN2 902 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms