RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 XAGE2Q96GT9 111 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 NUDT12Q9BQG2 462 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 PAG1Q9NWQ8 432 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 RAI14Q9P0K7 980 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.1□□□□□ -0.47
SS18-207ENST00000577636 DOCK3Q8IZD9 2030 aa12.1□□□□□ -0.47
SS18-207ENST00000577636 ST18O60284 1047 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 LDHCP07864 332 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 UQCRFS1P1P0C7P4 283 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 PRKAR2AP13861 404 aaKnown RBP12.09□□□□□ -0.47
SS18-207ENST00000577636 MDM2Q00987 491 aaPredicted RBP12.09□□□□□ -0.47
SS18-207ENST00000577636 RRP1BQ14684 758 aaKnown RBP12.09□□□□□ -0.47
SS18-207ENST00000577636 LRIT3Q3SXY7 679 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 TEX11Q8IYF3 940 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 P2RX7Q99572 595 aaKnown RBP12.09□□□□□ -0.47
SS18-207ENST00000577636 AS3MTQ9HBK9 375 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 CWC22Q9HCG8 908 aaKnown RBP12.09□□□□□ -0.47
SS18-207ENST00000577636 MTMR10Q9NXD2 777 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 TMOD4Q9NZQ9 345 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 OGDHLQ9ULD0 1010 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 STXBP5LQ9Y2K9 1186 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 MYH13Q9UKX3 1938 aa12.09□□□□□ -0.47
SS18-207ENST00000577636 MYH2Q9UKX2 1941 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 GOLIM4O00461 696 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 HSP90AA1P07900 732 aaKnown RBP12.08□□□□□ -0.48
SS18-207ENST00000577636 GSTO1P78417 241 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 MTMR2Q13614 643 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 TTF1Q15361 905 aaPredicted RBP12.08□□□□□ -0.48
SS18-207ENST00000577636 ZSCAN25Q6NSZ9 544 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 GPR153Q6NV75 609 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 KBTBD3Q8NAB2 608 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 GPRC5AQ8NFJ5 357 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 SNX21Q969T3 373 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 ZNF512BQ96KM6 892 aaPredicted RBP12.08□□□□□ -0.48
SS18-207ENST00000577636 FAM161BQ96MY7 647 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 PAGR1Q9BTK6 254 aa12.08□□□□□ -0.48
SS18-207ENST00000577636 COL6A3P12111 3177 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 ZFYP08048 801 aaPredicted RBP12.07□□□□□ -0.48
SS18-207ENST00000577636 ZKSCAN1P17029 563 aaPredicted RBP12.07□□□□□ -0.48
SS18-207ENST00000577636 CCND3P30281 292 aaPredicted RBP12.07□□□□□ -0.48
SS18-207ENST00000577636 CACNB2Q08289 660 aaPredicted RBP12.07□□□□□ -0.48
SS18-207ENST00000577636 NMIQ13287 307 aaPredicted RBP12.07□□□□□ -0.48
SS18-207ENST00000577636 Q3C1V9 767 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 PI16Q6UXB8 463 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 ZNF384Q8TF68 577 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 NSUN4Q96CB9 384 aaKnown RBP12.07□□□□□ -0.48
SS18-207ENST00000577636 NOL10Q9BSC4 688 aaKnown RBP12.07□□□□□ -0.48
SS18-207ENST00000577636 TRIM34Q9BYJ4 488 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 TBC1D2Q9BYX2 928 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.07□□□□□ -0.48
SS18-207ENST00000577636 TXNRD2Q9NNW7 524 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 HMG20BQ9P0W2 317 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 LRP2BPQ9P2M1 347 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 PFASO15067 1338 aa12.07□□□□□ -0.48
SS18-207ENST00000577636 GDF11O95390 407 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 SLC4A3P48751 1232 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 BACE1P56817 501 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 CCL14Q16627 93 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 LRRC26Q2I0M4 334 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 SH3D19Q5HYK7 790 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 RNF20Q5VTR2 975 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 SPATA5Q8NB90 893 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 SH3RF3Q8TEJ3 882 aaPredicted RBP12.06□□□□□ -0.48
SS18-207ENST00000577636 PI4KBQ9UBF8 816 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 MORF4L1Q9UBU8 362 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 NDUFB9Q9Y6M9 179 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 DOCK2Q92608 1830 aa12.06□□□□□ -0.48
SS18-207ENST00000577636 NPM3O75607 178 aaKnown RBP12.05□□□□□ -0.48
SS18-207ENST00000577636 MCM2P49736 904 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 HERVK_113P62684 666 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 JAG1P78504 1218 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 SHROOM1Q2M3G4 852 aaPredicted RBP12.05□□□□□ -0.48
SS18-207ENST00000577636 WDR78Q5VTH9 848 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 MAPKAPK5Q8IW41 473 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 CRACR2BQ8N4Y2 399 aaPredicted RBP12.05□□□□□ -0.48
SS18-207ENST00000577636 TGFBRAP1Q8WUH2 860 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 SOCS4Q8WXH5 440 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 COL25A1Q9BXS0 654 aaPredicted RBP12.05□□□□□ -0.48
SS18-207ENST00000577636 SENP6Q9GZR1 1112 aaPredicted RBP12.05□□□□□ -0.48
SS18-207ENST00000577636 HELLSQ9NRZ9 838 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 AATFQ9NY61 560 aaKnown RBP eCLIP12.05□□□□□ -0.48
SS18-207ENST00000577636 HERC5Q9UII4 1024 aaKnown RBP12.05□□□□□ -0.48
SS18-207ENST00000577636 DOCK1Q14185 1865 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 LAMA3Q16787 3333 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 ALPK3Q96L96 1907 aa12.05□□□□□ -0.48
SS18-207ENST00000577636 USP17L10C9JJH3 530 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 RNF113AO15541 343 aaKnown RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 XRCC5P13010 732 aaKnown RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 CNGA1P29973 690 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 MAPK4P31152 587 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 HSPA4P34932 840 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 RGS2P41220 211 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 ATN1P54259 1190 aaPredicted RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 ERVK-9P63128 1117 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 ERVK-24P63145 666 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 ZYXQ15942 572 aaKnown RBP12.04□□□□□ -0.48
SS18-207ENST00000577636 MCMDC2Q4G0Z9 681 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 MAP3K21Q5TCX8 1036 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 GPR142Q7Z601 462 aa12.04□□□□□ -0.48
SS18-207ENST00000577636 PLEKHH3Q7Z736 793 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms