RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ZSWIM5Q9P217 1185 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 SLC10A3P09131 477 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 DEFB115Q30KQ5 88 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 ADCK5Q3MIX3 580 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 IL17RAQ96F46 866 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 CEP95Q96GE4 821 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 C22orf23Q9BZE7 217 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 MTMR4Q9NYA4 1195 aa20.14■□□□□ 0.81
NUP88-210ENST00000574867 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.14■□□□□ 0.81
NUP88-210ENST00000574867 MCM5P33992 734 aa20.13■□□□□ 0.81
NUP88-210ENST00000574867 SPRYD7Q5W111 196 aa20.13■□□□□ 0.81
NUP88-210ENST00000574867 ZNF280CQ8ND82 737 aa20.13■□□□□ 0.81
NUP88-210ENST00000574867 JAKMIP1Q96N16 626 aaKnown RBP20.13■□□□□ 0.81
NUP88-210ENST00000574867 UBAC1Q9BSL1 405 aa20.13■□□□□ 0.81
NUP88-210ENST00000574867 MTA3Q9BTC8 594 aa20.13■□□□□ 0.81
NUP88-210ENST00000574867 SH2D4AQ9H788 454 aa20.13■□□□□ 0.81
NUP88-210ENST00000574867 ARHGEF10LQ9HCE6 1279 aa20.13■□□□□ 0.81
NUP88-210ENST00000574867 WDR19Q8NEZ3 1342 aa20.13■□□□□ 0.81
NUP88-210ENST00000574867 SART3Q15020 963 aaKnown RBP20.12■□□□□ 0.81
NUP88-210ENST00000574867 PAXIP1Q6ZW49 1069 aaPredicted RBP20.12■□□□□ 0.81
NUP88-210ENST00000574867 CCDC84Q86UT8 332 aaPredicted RBP20.12■□□□□ 0.81
NUP88-210ENST00000574867 CNKSR2Q8WXI2 1034 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 NYAP2Q9P242 653 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 AFG3L2Q9Y4W6 797 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 PTPRFP10586 1907 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 MYH4Q9Y623 1939 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 TTLL1O95922 423 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 ECE1P42892 770 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 RBM25P49756 843 aaKnown RBP20.12■□□□□ 0.81
NUP88-210ENST00000574867 CYB5R4Q7L1T6 521 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 NKX2-3Q8TAU0 364 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 ZSCAN10Q96SZ4 725 aaPredicted RBP20.12■□□□□ 0.81
NUP88-210ENST00000574867 TM6SF1Q9BZW5 370 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 IL17RBQ9NRM6 502 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 SYNPO2Q9UMS6 1093 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 KCNH4Q9UQ05 1017 aa20.12■□□□□ 0.81
NUP88-210ENST00000574867 CXCL11O14625 94 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 NOVP48745 357 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 BLOC1S2Q6QNY1 142 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 CLEC10AQ8IUN9 316 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 TTC14Q96N46 770 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 IRF6O14896 467 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 NMT2O60551 498 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 EEF2P13639 858 aaKnown RBP20.11■□□□□ 0.81
NUP88-210ENST00000574867 GJA5P36382 358 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 DGKHQ86XP1 1220 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 FEZ1Q99689 392 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 STX8Q9UNK0 236 aa20.11■□□□□ 0.81
NUP88-210ENST00000574867 TNKSO95271 1327 aa20.1■□□□□ 0.81
NUP88-210ENST00000574867 ERICH2A1L162 156 aa20.1■□□□□ 0.81
NUP88-210ENST00000574867 TRIM75PA6NK02 468 aa20.1■□□□□ 0.81
NUP88-210ENST00000574867 FAM155AB1AL88 458 aaPredicted RBP20.1■□□□□ 0.81
NUP88-210ENST00000574867 USP17L10C9JJH3 530 aa20.1■□□□□ 0.81
NUP88-210ENST00000574867 PRC1O43663 620 aa20.1■□□□□ 0.81
NUP88-210ENST00000574867 SPP2Q13103 211 aa20.1■□□□□ 0.81
NUP88-210ENST00000574867 DHX32Q7L7V1 743 aaKnown RBP20.1■□□□□ 0.81
NUP88-210ENST00000574867 KIAA1683Q9H0B3 1180 aa20.1■□□□□ 0.81
NUP88-210ENST00000574867 LOC285556D6RIA3 1793 aa20.1■□□□□ 0.81
NUP88-210ENST00000574867 CASTP20810 708 aaKnown RBP20.09■□□□□ 0.81
NUP88-210ENST00000574867 GTF2A2P52657 109 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 USP14P54578 494 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 BACE1P56817 501 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 ANTXR2P58335 489 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 ATP2B2Q01814 1243 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 SNAPC2Q13487 334 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 CYP4F22Q6NT55 531 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 TMEM87BQ96K49 555 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 CAPNS2Q96L46 248 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 TBC1D32Q96NH3 1257 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 ZKSCAN3Q9BRR0 538 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 TMX2Q9Y320 296 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 THSD7BQ9C0I4 1608 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 C19orf81C9J6K1 198 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 NOGQ13253 232 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 MTMR2Q13614 643 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 SIAH1Q8IUQ4 282 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 MKL1Q969V6 931 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 ZSWIM6Q9HCJ5 1215 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 CLIP2Q9UDT6 1046 aa20.09■□□□□ 0.81
NUP88-210ENST00000574867 IFIT3O14879 490 aaKnown RBP20.08■□□□□ 0.81
NUP88-210ENST00000574867 HTRA3P83110 453 aa20.08■□□□□ 0.81
NUP88-210ENST00000574867 ENAHQ8N8S7 591 aaPredicted RBP20.08■□□□□ 0.81
NUP88-210ENST00000574867 ACER1Q8TDN7 264 aa20.08■□□□□ 0.81
NUP88-210ENST00000574867 ANKS1AQ92625 1134 aa20.08■□□□□ 0.81
NUP88-210ENST00000574867 CYP46A1Q9Y6A2 500 aa20.08■□□□□ 0.81
NUP88-210ENST00000574867 A0A0G2JLL6 359 aaPredicted RBP20.07■□□□□ 0.8
NUP88-210ENST00000574867 A0A1W2PRG0 241 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 TOP1P11387 765 aaKnown RBP20.07■□□□□ 0.8
NUP88-210ENST00000574867 RPS6KB1P23443 525 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 EXOSC10Q01780 885 aaKnown RBP20.07■□□□□ 0.8
NUP88-210ENST00000574867 SH3D19Q5HYK7 790 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 RCSD1Q6JBY9 416 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 RUFY3Q7L099 469 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 CHST3Q7LGC8 479 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 PRRT2Q7Z6L0 340 aaPredicted RBP20.07■□□□□ 0.8
NUP88-210ENST00000574867 MANSC4A6NHS7 340 aaPredicted RBP20.07■□□□□ 0.8
NUP88-210ENST00000574867 CETPP11597 493 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 MKRN3Q13064 507 aaKnown RBP20.07■□□□□ 0.8
NUP88-210ENST00000574867 SEC23AQ15436 765 aa20.07■□□□□ 0.8
NUP88-210ENST00000574867 TMEM67Q5HYA8 995 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms