RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 PBX4Q9BYU1 374 aa16.21■□□□□ 0.19
CCDC40-208ENST00000572270 TMEM39AQ9NV64 488 aa16.21■□□□□ 0.19
CCDC40-208ENST00000572270 PQBP1O60828 265 aaKnown RBP16.2■□□□□ 0.18
CCDC40-208ENST00000572270 ERICH6Q7L0X2 663 aa16.2■□□□□ 0.18
CCDC40-208ENST00000572270 GINM1Q9NU53 330 aa16.2■□□□□ 0.18
CCDC40-208ENST00000572270 CEP126Q9P2H0 1117 aa16.2■□□□□ 0.18
CCDC40-208ENST00000572270 PI4KBQ9UBF8 816 aa16.2■□□□□ 0.18
CCDC40-208ENST00000572270 CNMDO75829 334 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 BMP1P13497 986 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 PBX2P40425 430 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 GSTO1P78417 241 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 MECOMQ03112 1051 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 ADGRE1Q14246 886 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 OLFML2BQ68BL8 750 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 SNX27Q96L92 541 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 EPHX3Q9H6B9 360 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 ZNF236Q9UL36 1845 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 PDS5AQ29RF7 1337 aaKnown RBP16.19■□□□□ 0.18
CCDC40-208ENST00000572270 MYO9BQ13459 2157 aa16.19■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L15C9J2P7 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L13C9JLJ4 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L11C9JVI0 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L18D6R9N7 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L22D6RA61 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L17D6RBQ6 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L19D6RCP7 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L20D6RJB6 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 LDHCP07864 332 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 USP17L24Q0WX57 530 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 RASGRF1Q13972 1273 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 CCDC102BQ68D86 513 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 ATG9AQ7Z3C6 839 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 TEX11Q8IYF3 940 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 CRACR2BQ8N4Y2 399 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-208ENST00000572270 SLC44A5Q8NCS7 719 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.18■□□□□ 0.18
CCDC40-208ENST00000572270 DHX36Q9H2U1 1008 aaKnown RBP16.18■□□□□ 0.18
CCDC40-208ENST00000572270 EMILIN3Q9NT22 766 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 MSRAQ9UJ68 235 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 PHF24Q9UPV7 400 aa16.18■□□□□ 0.18
CCDC40-208ENST00000572270 SIPA1L1O43166 1804 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 ZBTB22O15209 634 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 GDF11O95390 407 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 RAB30Q15771 203 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 FAM47AQ5JRC9 791 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 MICALL1Q8N3F8 863 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 FEZ1Q99689 392 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 SIL1Q9H173 461 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 SLC5A4Q9NY91 659 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 ZBTB21Q9ULJ3 1066 aa16.17■□□□□ 0.18
CCDC40-208ENST00000572270 GRXCR1A8MXD5 290 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 DCDC2CA8MYV0 355 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 IGHA2P01877 340 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 ADORA2AP29274 412 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 RFX5P48382 616 aaPredicted RBP16.16■□□□□ 0.18
CCDC40-208ENST00000572270 TFF2Q03403 129 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 PPIGQ13427 754 aaKnown RBP eCLIP16.16■□□□□ 0.18
CCDC40-208ENST00000572270 SKIV2LQ15477 1246 aaKnown RBP16.16■□□□□ 0.18
CCDC40-208ENST00000572270 ZYXQ15942 572 aaKnown RBP16.16■□□□□ 0.18
CCDC40-208ENST00000572270 RNF180Q86T96 592 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 NOL10Q9BSC4 688 aaKnown RBP16.16■□□□□ 0.18
CCDC40-208ENST00000572270 XPNPEP3Q9NQH7 507 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 FBXO3Q9UK99 471 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 CHD9Q3L8U1 2897 aa16.16■□□□□ 0.18
CCDC40-208ENST00000572270 PIEZO1Q92508 2521 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 REV3LO60673 3130 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 A0A1W2PQ45 241 aaPredicted RBP16.15■□□□□ 0.18
CCDC40-208ENST00000572270 A0A1W2PQY0 241 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 CIAO1O76071 339 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 TIMP1P01033 207 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 RARBP10826 455 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 KCNQ1P51787 676 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 JAG1P78504 1218 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 DDX10Q13206 875 aaKnown RBP16.15■□□□□ 0.18
CCDC40-208ENST00000572270 C12orf42Q96LP6 360 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 SLC28A3Q9HAS3 691 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 BTBD7Q9P203 1132 aa16.15■□□□□ 0.18
CCDC40-208ENST00000572270 STRNO43815 780 aa16.14■□□□□ 0.17
CCDC40-208ENST00000572270 ADORA1P30542 326 aa16.14■□□□□ 0.17
CCDC40-208ENST00000572270 FAAP100Q0VG06 881 aa16.14■□□□□ 0.17
CCDC40-208ENST00000572270 SHROOM1Q2M3G4 852 aaPredicted RBP16.14■□□□□ 0.17
CCDC40-208ENST00000572270 LBX2Q6XYB7 198 aa16.14■□□□□ 0.17
CCDC40-208ENST00000572270 CATSPERGQ6ZRH7 1159 aa16.14■□□□□ 0.17
CCDC40-208ENST00000572270 TOX2Q96NM4 488 aa16.14■□□□□ 0.17
CCDC40-208ENST00000572270 GPR37L1O60883 481 aa16.13■□□□□ 0.17
CCDC40-208ENST00000572270 USP14P54578 494 aa16.13■□□□□ 0.17
CCDC40-208ENST00000572270 TMEM240Q5SV17 173 aa16.13■□□□□ 0.17
CCDC40-208ENST00000572270 PRAMEF19Q5SWL8 479 aa16.13■□□□□ 0.17
CCDC40-208ENST00000572270 MFSD5Q6N075 450 aa16.13■□□□□ 0.17
CCDC40-208ENST00000572270 PSRC1Q6PGN9 363 aaPredicted RBP16.13■□□□□ 0.17
CCDC40-208ENST00000572270 ANKRD33Q7Z3H0 272 aa16.13■□□□□ 0.17
CCDC40-208ENST00000572270 FOXP4Q8IVH2 680 aaPredicted RBP16.13■□□□□ 0.17
CCDC40-208ENST00000572270 NKX2-4Q9H2Z4 354 aa16.13■□□□□ 0.17
CCDC40-208ENST00000572270 DNAJC18Q9H819 358 aa16.13■□□□□ 0.17
CCDC40-208ENST00000572270 GBF1Q92538 1859 aa16.12■□□□□ 0.17
CCDC40-208ENST00000572270 APBB1O00213 710 aa16.12■□□□□ 0.17
CCDC40-208ENST00000572270 IL15P40933 162 aaPredicted RBP16.12■□□□□ 0.17
CCDC40-208ENST00000572270 SH3RF3Q8TEJ3 882 aaPredicted RBP16.12■□□□□ 0.17
CCDC40-208ENST00000572270 ZNF384Q8TF68 577 aa16.12■□□□□ 0.17
CCDC40-208ENST00000572270 NSUN4Q96CB9 384 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms