RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 C16orf86Q6ZW13 317 aa24.36■■□□□ 1.49
CLK3-225ENST00000569063 ACER1Q8TDN7 264 aa24.36■■□□□ 1.49
CLK3-225ENST00000569063 ARPP21Q9UBL0 812 aaPredicted RBP24.36■■□□□ 1.49
CLK3-225ENST00000569063 MGAMO43451 1857 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 SMIM22K7EJ46 135 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 MPHOSPH10O00566 681 aaKnown RBP24.35■■□□□ 1.49
CLK3-225ENST00000569063 GNAT2P19087 354 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 CDK8P49336 464 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 PRKCZQ05513 592 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 SBK1Q52WX2 424 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 TMEM179Q6ZVK1 233 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 RAET1EQ8TD07 263 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 CCDC17Q96LX7 622 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 P2RX7Q99572 595 aaKnown RBP24.35■■□□□ 1.49
CLK3-225ENST00000569063 FSD1Q9BTV5 496 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 MORF4L1Q9UBU8 362 aa24.35■■□□□ 1.49
CLK3-225ENST00000569063 TNPO2O14787 897 aaKnown RBP24.34■■□□□ 1.49
CLK3-225ENST00000569063 GPAA1O43292 621 aa24.34■■□□□ 1.49
CLK3-225ENST00000569063 PDE1AP54750 535 aa24.34■■□□□ 1.49
CLK3-225ENST00000569063 HERVK_113P62684 666 aa24.34■■□□□ 1.49
CLK3-225ENST00000569063 ZYXQ15942 572 aaKnown RBP24.34■■□□□ 1.49
CLK3-225ENST00000569063 SH3TC2Q8TF17 1288 aa24.34■■□□□ 1.49
CLK3-225ENST00000569063 GABRQQ9UN88 632 aa24.34■■□□□ 1.49
CLK3-225ENST00000569063 M0R2C6 588 aa24.33■■□□□ 1.49
CLK3-225ENST00000569063 IGHDP01880 384 aa24.33■■□□□ 1.49
CLK3-225ENST00000569063 A0A1W2PRG0 241 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 POTEFA5A3E0 1075 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L15C9J2P7 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L13C9JLJ4 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L11C9JVI0 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L18D6R9N7 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L22D6RA61 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L17D6RBQ6 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L19D6RCP7 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L20D6RJB6 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 AKR1B1P15121 316 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 USP17L24Q0WX57 530 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 ZMYM1Q5SVZ6 1142 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 GTF3C2Q8WUA4 911 aaPredicted RBP24.32■■□□□ 1.48
CLK3-225ENST00000569063 EVI5LQ96CN4 794 aa24.32■■□□□ 1.48
CLK3-225ENST00000569063 PATL2C9JE40 543 aaKnown RBP24.31■■□□□ 1.48
CLK3-225ENST00000569063 VCAM1P19320 739 aa24.31■■□□□ 1.48
CLK3-225ENST00000569063 GRK4P32298 578 aa24.31■■□□□ 1.48
CLK3-225ENST00000569063 CATSPERGQ6ZRH7 1159 aa24.31■■□□□ 1.48
CLK3-225ENST00000569063 COA7Q96BR5 231 aa24.31■■□□□ 1.48
CLK3-225ENST00000569063 SEC62Q99442 399 aaKnown RBP24.31■■□□□ 1.48
CLK3-225ENST00000569063 TMEM106CQ9BVX2 250 aa24.31■■□□□ 1.48
CLK3-225ENST00000569063 LNPKQ9C0E8 428 aa24.31■■□□□ 1.48
CLK3-225ENST00000569063 RBBP6Q7Z6E9 1792 aaKnown RBP24.31■■□□□ 1.48
CLK3-225ENST00000569063 FLT3LGP49771 235 aa24.3■■□□□ 1.48
CLK3-225ENST00000569063 IRF5Q13568 498 aa24.3■■□□□ 1.48
CLK3-225ENST00000569063 SIAH1Q8IUQ4 282 aa24.3■■□□□ 1.48
CLK3-225ENST00000569063 GPRC5AQ8NFJ5 357 aa24.3■■□□□ 1.48
CLK3-225ENST00000569063 EPB41L4AQ9HCS5 686 aaPredicted RBP24.3■■□□□ 1.48
CLK3-225ENST00000569063 TXNRD2Q9NNW7 524 aa24.3■■□□□ 1.48
CLK3-225ENST00000569063 RBPJLQ9UBG7 517 aa24.3■■□□□ 1.48
CLK3-225ENST00000569063 NUCB1Q02818 461 aa24.29■■□□□ 1.48
CLK3-225ENST00000569063 B4GALNT3Q6L9W6 998 aa24.29■■□□□ 1.48
CLK3-225ENST00000569063 POTEEQ6S8J3 1075 aa24.29■■□□□ 1.48
CLK3-225ENST00000569063 SLAIN1Q8ND83 568 aa24.29■■□□□ 1.48
CLK3-225ENST00000569063 ROBO3Q96MS0 1386 aa24.29■■□□□ 1.48
CLK3-225ENST00000569063 MYH8P13535 1937 aa24.28■■□□□ 1.48
CLK3-225ENST00000569063 APPP05067 770 aa24.28■■□□□ 1.48
CLK3-225ENST00000569063 CHD1LQ86WJ1 897 aa24.28■■□□□ 1.48
CLK3-225ENST00000569063 TICAM2Q86XR7 235 aa24.28■■□□□ 1.48
CLK3-225ENST00000569063 PXYLP1Q8TE99 480 aa24.28■■□□□ 1.48
CLK3-225ENST00000569063 RPAP3Q9H6T3 665 aaPredicted RBP24.28■■□□□ 1.48
CLK3-225ENST00000569063 TNRC18O15417 2968 aaPredicted RBP24.27■■□□□ 1.48
CLK3-225ENST00000569063 MINDY4BA8MYZ0 360 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 TDO2P48775 406 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 ICA1Q05084 483 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 LBX2Q6XYB7 198 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 IFNL3Q8IZI9 196 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 NACAP1Q9BZK3 213 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 KANSL2Q9H9L4 492 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 ARHGEF10LQ9HCE6 1279 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 TMX2Q9Y320 296 aa24.27■■□□□ 1.48
CLK3-225ENST00000569063 ADCY3O60266 1144 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 PEX10O60683 326 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 EN2P19622 333 aaPredicted RBP24.26■■□□□ 1.47
CLK3-225ENST00000569063 ERVK-9P63128 1117 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 ERVK-24P63145 666 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 Q3C1V9 767 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 LPAR1Q92633 364 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 SH2D4AQ9H788 454 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 GJD2Q9UKL4 321 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 RABGAP1Q9Y3P9 1069 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 BRCA2P51587 3418 aa24.26■■□□□ 1.47
CLK3-225ENST00000569063 MYCP01106 439 aaPredicted RBP24.25■■□□□ 1.47
CLK3-225ENST00000569063 CLEC10AQ8IUN9 316 aa24.25■■□□□ 1.47
CLK3-225ENST00000569063 MKNK2Q9HBH9 465 aa24.25■■□□□ 1.47
CLK3-225ENST00000569063 EEF2P13639 858 aaKnown RBP24.24■■□□□ 1.47
CLK3-225ENST00000569063 RASA1P20936 1047 aa24.24■■□□□ 1.47
CLK3-225ENST00000569063 MAPK4P31152 587 aa24.24■■□□□ 1.47
CLK3-225ENST00000569063 UBXN2AP68543 259 aa24.24■■□□□ 1.47
CLK3-225ENST00000569063 MTFR1Q15390 333 aa24.24■■□□□ 1.47
CLK3-225ENST00000569063 KIAA1755Q5JYT7 1200 aa24.24■■□□□ 1.47
CLK3-225ENST00000569063 PAGR1Q9BTK6 254 aa24.24■■□□□ 1.47
CLK3-225ENST00000569063 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.24■■□□□ 1.47
CLK3-225ENST00000569063 OSBPL3Q9H4L5 887 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms