RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CERKLQ49MI3 558 aaPredicted RBP18.13■□□□□ 0.49
CLN3-236ENST00000568558 USP6NLQ92738 828 aa18.13■□□□□ 0.49
CLN3-236ENST00000568558 RLFQ13129 1914 aa18.13■□□□□ 0.49
CLN3-236ENST00000568558 A0A0G2JMZ2 1700 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 PARP14Q460N5 1801 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 MAGEB6P1A0A0J9YX57 407 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L15C9J2P7 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L13C9JLJ4 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L11C9JVI0 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L18D6R9N7 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L22D6RA61 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L17D6RBQ6 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L19D6RCP7 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L20D6RJB6 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 PDE6AP16499 860 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 MNX1P50219 401 aaPredicted RBP18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP14P54578 494 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 USP17L24Q0WX57 530 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 GPR142Q7Z601 462 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 TRMT44Q8IYL2 757 aaKnown RBP18.12■□□□□ 0.49
CLN3-236ENST00000568558 CLASRPQ8N2M8 674 aaKnown RBP18.12■□□□□ 0.49
CLN3-236ENST00000568558 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-236ENST00000568558 KIF1BPQ96EK5 621 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 KIAA1683Q9H0B3 1180 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 OGDHLQ9ULD0 1010 aa18.12■□□□□ 0.49
CLN3-236ENST00000568558 CNMDO75829 334 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 ZKSCAN1P17029 563 aaPredicted RBP18.11■□□□□ 0.49
CLN3-236ENST00000568558 RGS2P41220 211 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 GABPAQ06546 454 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 MORN1Q5T089 497 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 SLC9C2Q5TAH2 1124 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 CATSPERGQ6ZRH7 1159 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 PLEKHH3Q7Z736 793 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 CCAR1Q8IX12 1150 aaKnown RBP18.11■□□□□ 0.49
CLN3-236ENST00000568558 RPAP2Q8IXW5 612 aaPredicted RBP18.11■□□□□ 0.49
CLN3-236ENST00000568558 ACER1Q8TDN7 264 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 CRNKL1Q9BZJ0 848 aaKnown RBP18.11■□□□□ 0.49
CLN3-236ENST00000568558 CABP5Q9NP86 173 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 RABGAP1Q9Y3P9 1069 aa18.11■□□□□ 0.49
CLN3-236ENST00000568558 ZNF236Q9UL36 1845 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 ZNF532Q9HCE3 1301 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 A0A1W2PPC1 479 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 APBB1O00213 710 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 POLR3DP05423 398 aaPredicted RBP18.1■□□□□ 0.49
CLN3-236ENST00000568558 VCAM1P19320 739 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 GUCY1A2P33402 732 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 SIRT2Q8IXJ6 389 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 APBA2Q99767 749 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 NBPF3Q9H094 633 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 DDX19BQ9UMR2 479 aa18.1■□□□□ 0.49
CLN3-236ENST00000568558 TCRBV5S4A2TA0A5A2 114 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 GOLIM4O00461 696 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 HMMRO75330 724 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 IFIT2P09913 472 aaKnown RBP18.09■□□□□ 0.49
CLN3-236ENST00000568558 EVX2Q03828 476 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 CACNB2Q08289 660 aaPredicted RBP18.09■□□□□ 0.49
CLN3-236ENST00000568558 CCL14Q16627 93 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 LBX2Q6XYB7 198 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 DNAJC2Q99543 621 aaKnown RBP18.09■□□□□ 0.49
CLN3-236ENST00000568558 C11orf49Q9H6J7 331 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 ZBTB40Q9NUA8 1239 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 MCM9Q9NXL9 1143 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 COG6Q9Y2V7 657 aa18.09■□□□□ 0.49
CLN3-236ENST00000568558 LAMA3Q16787 3333 aa18.08■□□□□ 0.48
CLN3-236ENST00000568558 CCNA1P78396 465 aa18.08■□□□□ 0.48
CLN3-236ENST00000568558 MAP2K5Q13163 448 aa18.08■□□□□ 0.48
CLN3-236ENST00000568558 SEPT2Q15019 361 aa18.08■□□□□ 0.48
CLN3-236ENST00000568558 C7orf61Q8IZ16 206 aa18.08■□□□□ 0.48
CLN3-236ENST00000568558 LCORLQ8N3X6 602 aa18.08■□□□□ 0.48
CLN3-236ENST00000568558 SDR42E1Q8WUS8 393 aa18.08■□□□□ 0.48
CLN3-236ENST00000568558 CWC22Q9HCG8 908 aaKnown RBP18.08■□□□□ 0.48
CLN3-236ENST00000568558 COL11A1P12107 1806 aaPredicted RBP18.07■□□□□ 0.48
CLN3-236ENST00000568558 SPDYE16A6NNV3 312 aaPredicted RBP18.07■□□□□ 0.48
CLN3-236ENST00000568558 GLRX3O76003 335 aaKnown RBP18.07■□□□□ 0.48
CLN3-236ENST00000568558 CCND3P30281 292 aaPredicted RBP18.07■□□□□ 0.48
CLN3-236ENST00000568558 EDC3Q96F86 508 aaKnown RBP18.07■□□□□ 0.48
CLN3-236ENST00000568558 RPAP3Q9H6T3 665 aaPredicted RBP18.07■□□□□ 0.48
CLN3-236ENST00000568558 DCP1AQ9NPI6 582 aaPredicted RBP18.07■□□□□ 0.48
CLN3-236ENST00000568558 BTBD7Q9P203 1132 aa18.07■□□□□ 0.48
CLN3-236ENST00000568558 STAP2Q9UGK3 403 aa18.07■□□□□ 0.48
CLN3-236ENST00000568558 ZNFX1Q9P2E3 1918 aaKnown RBP18.06■□□□□ 0.48
CLN3-236ENST00000568558 PFASO15067 1338 aa18.06■□□□□ 0.48
CLN3-236ENST00000568558 RAB11FIP3O75154 756 aa18.06■□□□□ 0.48
CLN3-236ENST00000568558 LHX8Q68G74 356 aa18.06■□□□□ 0.48
CLN3-236ENST00000568558 A0A1W2PRG0 241 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 SLC15A5A6NIM6 579 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 MPHOSPH10O00566 681 aaKnown RBP18.05■□□□□ 0.48
CLN3-236ENST00000568558 CYP2D6P10635 497 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 PTPREP23469 700 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 WDR78Q5VTH9 848 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 GDF15Q99988 308 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 BCL11AQ9H165 835 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 ARMT1Q9H993 441 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 PAG1Q9NWQ8 432 aa18.05■□□□□ 0.48
CLN3-236ENST00000568558 ZMYND8Q9ULU4 1186 aaPredicted RBP18.05■□□□□ 0.48
CLN3-236ENST00000568558 COL6A1P12109 1028 aa18.04■□□□□ 0.48
CLN3-236ENST00000568558 ADD2P35612 726 aa18.04■□□□□ 0.48
CLN3-236ENST00000568558 GRB14Q14449 540 aa18.04■□□□□ 0.48
CLN3-236ENST00000568558 SLC44A5Q8NCS7 719 aa18.04■□□□□ 0.48
CLN3-236ENST00000568558 BOLA2Q9H3K6 86 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms