RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 NPY5RQ15761 445 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 LONRF3Q496Y0 759 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 DRC7Q8IY82 874 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 CTCFLQ8NI51 663 aaPredicted RBP23.32■■□□□ 1.32
CLN3-230ENST00000568076 TGFBRAP1Q8WUH2 860 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 BPIFA3Q9BQP9 254 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 ANO8Q9HCE9 1232 aaPredicted RBP23.32■■□□□ 1.32
CLN3-230ENST00000568076 PODXL2Q9NZ53 605 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 CLIP2Q9UDT6 1046 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 TUBE1Q9UJT0 475 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 KLRG2A4D1S0 409 aaPredicted RBP23.32■■□□□ 1.32
CLN3-230ENST00000568076 TFAP4Q01664 338 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 KIAA1524Q8TCG1 905 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 R3HCC1Q9Y3T6 440 aaKnown RBP23.32■■□□□ 1.32
CLN3-230ENST00000568076 ATP2B1P20020 1258 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 KRT2P35908 639 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 TXNRD1Q16881 649 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 METTL16Q86W50 562 aaKnown RBP23.31■■□□□ 1.32
CLN3-230ENST00000568076 TBC1D16Q8TBP0 767 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 MRFAP1L1Q96HT8 127 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 SPTLC3Q9NUV7 552 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 PNOCQ13519 176 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 ZRSR1Q15695 479 aaKnown RBP23.31■■□□□ 1.32
CLN3-230ENST00000568076 CCDC144BQ3MJ40 725 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 KRBA2Q6ZNG9 492 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 CRAMP1Q96RY5 1269 aa23.31■■□□□ 1.32
CLN3-230ENST00000568076 LDHCP07864 332 aa23.3■■□□□ 1.32
CLN3-230ENST00000568076 PLCD1P51178 756 aa23.3■■□□□ 1.32
CLN3-230ENST00000568076 ISM2Q6H9L7 571 aa23.3■■□□□ 1.32
CLN3-230ENST00000568076 TNFRSF25Q93038 417 aa23.3■■□□□ 1.32
CLN3-230ENST00000568076 BTDP43251 543 aa23.29■■□□□ 1.32
CLN3-230ENST00000568076 NOM1Q5C9Z4 860 aaKnown RBP23.29■■□□□ 1.32
CLN3-230ENST00000568076 MAPKAPK5Q8IW41 473 aa23.29■■□□□ 1.32
CLN3-230ENST00000568076 SRPRBQ9Y5M8 271 aaKnown RBP23.29■■□□□ 1.32
CLN3-230ENST00000568076 NAV1Q8NEY1 1877 aa23.29■■□□□ 1.32
CLN3-230ENST00000568076 VEGFAP15692 232 aaPredicted RBP23.29■■□□□ 1.32
CLN3-230ENST00000568076 DGKHQ86XP1 1220 aa23.29■■□□□ 1.32
CLN3-230ENST00000568076 FOXP4Q8IVH2 680 aaPredicted RBP23.29■■□□□ 1.32
CLN3-230ENST00000568076 SLC44A5Q8NCS7 719 aa23.29■■□□□ 1.32
CLN3-230ENST00000568076 NOL10Q9BSC4 688 aaKnown RBP23.29■■□□□ 1.32
CLN3-230ENST00000568076 LTBP1Q14766 1721 aa23.29■■□□□ 1.32
CLN3-230ENST00000568076 WNT7AO00755 349 aa23.28■■□□□ 1.32
CLN3-230ENST00000568076 LRMPQ12912 555 aa23.28■■□□□ 1.32
CLN3-230ENST00000568076 CNNM3Q8NE01 707 aa23.28■■□□□ 1.32
CLN3-230ENST00000568076 SAP30BPQ9UHR5 308 aaKnown RBP23.28■■□□□ 1.32
CLN3-230ENST00000568076 GPR75-ASB3A0A0A6YYF3 556 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 USP17L3A6NCW0 530 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 USP17L4A6NCW7 530 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 NCAPHQ15003 741 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 USP17L1Q7RTZ2 530 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 ZNF579Q8NAF0 562 aaKnown RBP23.27■■□□□ 1.32
CLN3-230ENST00000568076 ANKS1AQ92625 1134 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 KAT14Q9H8E8 782 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 CEP131Q9UPN4 1083 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 LRRC37AA6NMS7 1700 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 FOXN1O15353 648 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 TERF1P54274 439 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 MDM2Q00987 491 aaPredicted RBP23.27■■□□□ 1.32
CLN3-230ENST00000568076 MFSD14BQ5SR56 506 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 MKNK2Q9HBH9 465 aa23.27■■□□□ 1.32
CLN3-230ENST00000568076 TRIM75PA6NK02 468 aa23.26■■□□□ 1.31
CLN3-230ENST00000568076 SCG2P13521 617 aa23.26■■□□□ 1.31
CLN3-230ENST00000568076 NT5C2P49902 561 aa23.26■■□□□ 1.31
CLN3-230ENST00000568076 PFKFB3Q16875 520 aaPredicted RBP23.26■■□□□ 1.31
CLN3-230ENST00000568076 ZNF827Q17R98 1081 aa23.26■■□□□ 1.31
CLN3-230ENST00000568076 MORC2Q9Y6X9 1032 aaPredicted RBP23.26■■□□□ 1.31
CLN3-230ENST00000568076 CDK5RAP2Q96SN8 1893 aa23.26■■□□□ 1.31
CLN3-230ENST00000568076 USP49Q70CQ1 688 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 ELOA2Q8IYF1 753 aaPredicted RBP23.25■■□□□ 1.31
CLN3-230ENST00000568076 PNMA1Q8ND90 353 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 CACTINQ8WUQ7 758 aaKnown RBP23.25■■□□□ 1.31
CLN3-230ENST00000568076 CSRNP2Q9H175 543 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 FAM13BQ9NYF5 915 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 PCDHA5Q9Y5H7 936 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 C6orf229H3BNL8 230 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 ADAMTS3O15072 1205 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 RASA1P20936 1047 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 KIF5BP33176 963 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 RHBDL3P58872 404 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 AMOTL1Q8IY63 956 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 STAG2Q8N3U4 1231 aa23.25■■□□□ 1.31
CLN3-230ENST00000568076 DDX60LQ5H9U9 1706 aaKnown RBP23.24■■□□□ 1.31
CLN3-230ENST00000568076 PPEF1O14829 653 aaPredicted RBP23.24■■□□□ 1.31
CLN3-230ENST00000568076 POLR2DO15514 142 aaKnown RBP23.24■■□□□ 1.31
CLN3-230ENST00000568076 TSPY3P0CV98 308 aa23.24■■□□□ 1.31
CLN3-230ENST00000568076 TSPY8P0CW00 308 aa23.24■■□□□ 1.31
CLN3-230ENST00000568076 FAM163AQ96GL9 167 aaPredicted RBP23.24■■□□□ 1.31
CLN3-230ENST00000568076 BRMS1Q9HCU9 246 aa23.24■■□□□ 1.31
CLN3-230ENST00000568076 TCP11L1Q9NUJ3 509 aa23.24■■□□□ 1.31
CLN3-230ENST00000568076 ANKRD31Q8N7Z5 1873 aa23.24■■□□□ 1.31
CLN3-230ENST00000568076 BAZ2BQ9UIF8 2168 aaKnown RBP23.24■■□□□ 1.31
CLN3-230ENST00000568076 CERS3Q8IU89 383 aa23.23■■□□□ 1.31
CLN3-230ENST00000568076 SP8Q8IXZ3 490 aa23.23■■□□□ 1.31
CLN3-230ENST00000568076 TEX11Q8IYF3 940 aa23.23■■□□□ 1.31
CLN3-230ENST00000568076 SERTAD1Q9UHV2 236 aa23.23■■□□□ 1.31
CLN3-230ENST00000568076 ZNF444Q8N0Y2 327 aaPredicted RBP23.23■■□□□ 1.31
CLN3-230ENST00000568076 HSD3B7Q9H2F3 369 aa23.23■■□□□ 1.31
CLN3-230ENST00000568076 MAD2L2Q9UI95 211 aa23.23■■□□□ 1.31
CLN3-230ENST00000568076 GAKO14976 1311 aa23.23■■□□□ 1.31
CLN3-230ENST00000568076 FLT1P17948 1338 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms