RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 AMOTL1Q8IY63 956 aa18.02■□□□□ 0.48
CLN3-222ENST00000566083 ANKLE1Q8NAG6 615 aa18.02■□□□□ 0.48
CLN3-222ENST00000566083 DDRGK1Q96HY6 314 aa18.02■□□□□ 0.48
CLN3-222ENST00000566083 HMX1Q9NP08 348 aaPredicted RBP18.02■□□□□ 0.48
CLN3-222ENST00000566083 SWAP70Q9UH65 585 aa18.02■□□□□ 0.48
CLN3-222ENST00000566083 RABGAP1Q9Y3P9 1069 aa18.02■□□□□ 0.48
CLN3-222ENST00000566083 H0YGN5 161 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 PLCD1P51178 756 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 ERVK-9P63128 1117 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 ERVK-24P63145 666 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 ZSCAN25Q6NSZ9 544 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 LRRCC1Q9C099 1032 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 CRISPLD2Q9H0B8 497 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.01■□□□□ 0.47
CLN3-222ENST00000566083 ATP8A2Q9NTI2 1148 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 RBPJLQ9UBG7 517 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 TRIOBPQ9H2D6 2365 aa18.01■□□□□ 0.47
CLN3-222ENST00000566083 SHMT1P34896 483 aa18■□□□□ 0.47
CLN3-222ENST00000566083 GABPAQ06546 454 aa18■□□□□ 0.47
CLN3-222ENST00000566083 HAUS7Q99871 368 aa18■□□□□ 0.47
CLN3-222ENST00000566083 CWC22Q9HCG8 908 aaKnown RBP18■□□□□ 0.47
CLN3-222ENST00000566083 DCP1AQ9NPI6 582 aaPredicted RBP18■□□□□ 0.47
CLN3-222ENST00000566083 TCRBV5S4A2TA0A5A2 114 aa17.99■□□□□ 0.47
CLN3-222ENST00000566083 UBE3CQ15386 1083 aa17.99■□□□□ 0.47
CLN3-222ENST00000566083 SHROOM1Q2M3G4 852 aaPredicted RBP17.99■□□□□ 0.47
CLN3-222ENST00000566083 LBX2Q6XYB7 198 aa17.99■□□□□ 0.47
CLN3-222ENST00000566083 CATSPERGQ6ZRH7 1159 aa17.99■□□□□ 0.47
CLN3-222ENST00000566083 BOLA2Q9H3K6 86 aa17.99■□□□□ 0.47
CLN3-222ENST00000566083 TXNRD2Q9NNW7 524 aa17.99■□□□□ 0.47
CLN3-222ENST00000566083 ADD2P35612 726 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 RGS2P41220 211 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 TMEM179Q6ZVK1 233 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 NECAB2Q7Z6G3 386 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 PLEKHH3Q7Z736 793 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 PAGR1Q9BTK6 254 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 COLQQ9Y215 455 aaPredicted RBP17.98■□□□□ 0.47
CLN3-222ENST00000566083 VCAM1P19320 739 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 CYP2B6P20813 491 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 ZYXQ15942 572 aaKnown RBP17.98■□□□□ 0.47
CLN3-222ENST00000566083 GPR142Q7Z601 462 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 CCDC17Q96LX7 622 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 BCL11AQ9H165 835 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 SH2D4AQ9H788 454 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 HOXC10Q9NYD6 342 aa17.98■□□□□ 0.47
CLN3-222ENST00000566083 MPHOSPH10O00566 681 aaKnown RBP17.97■□□□□ 0.47
CLN3-222ENST00000566083 EVI5O60447 810 aa17.97■□□□□ 0.47
CLN3-222ENST00000566083 ZKSCAN1P17029 563 aaPredicted RBP17.97■□□□□ 0.47
CLN3-222ENST00000566083 Q3C1V9 767 aa17.97■□□□□ 0.47
CLN3-222ENST00000566083 MAP3K21Q5TCX8 1036 aa17.97■□□□□ 0.47
CLN3-222ENST00000566083 LCORLQ8N3X6 602 aa17.97■□□□□ 0.47
CLN3-222ENST00000566083 SDR42E1Q8WUS8 393 aa17.97■□□□□ 0.47
CLN3-222ENST00000566083 GPATCH3Q96I76 525 aa17.97■□□□□ 0.47
CLN3-222ENST00000566083 APBA2Q99767 749 aa17.97■□□□□ 0.47
CLN3-222ENST00000566083 MBD4O95243 580 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 SEPT2Q15019 361 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 MORN1Q5T089 497 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 ACER1Q8TDN7 264 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 TRIB2Q92519 343 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 LPAR1Q92633 364 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 USP6NLQ92738 828 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 ARMT1Q9H993 441 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 IVNS1ABPQ9Y6Y0 642 aa17.96■□□□□ 0.47
CLN3-222ENST00000566083 PRKAR2AP13861 404 aaKnown RBP17.95■□□□□ 0.46
CLN3-222ENST00000566083 COG2Q14746 738 aa17.95■□□□□ 0.46
CLN3-222ENST00000566083 NAV1Q8NEY1 1877 aa17.95■□□□□ 0.46
CLN3-222ENST00000566083 EDC3Q96F86 508 aaKnown RBP17.95■□□□□ 0.46
CLN3-222ENST00000566083 NBPF3Q9H094 633 aa17.95■□□□□ 0.46
CLN3-222ENST00000566083 PORCNQ9H237 461 aa17.95■□□□□ 0.46
CLN3-222ENST00000566083 RPAP3Q9H6T3 665 aaPredicted RBP17.95■□□□□ 0.46
CLN3-222ENST00000566083 ARHGEF10LQ9HCE6 1279 aa17.95■□□□□ 0.46
CLN3-222ENST00000566083 ECHDC1Q9NTX5 307 aa17.95■□□□□ 0.46
CLN3-222ENST00000566083 SLC15A5A6NIM6 579 aa17.94■□□□□ 0.46
CLN3-222ENST00000566083 GUCY1A2P33402 732 aa17.94■□□□□ 0.46
CLN3-222ENST00000566083 MAP2K5Q13163 448 aa17.94■□□□□ 0.46
CLN3-222ENST00000566083 MB21D1Q8N884 522 aa17.94■□□□□ 0.46
CLN3-222ENST00000566083 PAWRQ96IZ0 340 aaKnown RBP17.94■□□□□ 0.46
CLN3-222ENST00000566083 OGDHLQ9ULD0 1010 aa17.94■□□□□ 0.46
CLN3-222ENST00000566083 DDX60LQ5H9U9 1706 aaKnown RBP17.94■□□□□ 0.46
CLN3-222ENST00000566083 FXR1P51114 621 aaKnown RBP eCLIP17.93■□□□□ 0.46
CLN3-222ENST00000566083 LRRFIP1Q32MZ4 808 aaKnown RBP17.93■□□□□ 0.46
CLN3-222ENST00000566083 C12orf60Q5U649 245 aa17.93■□□□□ 0.46
CLN3-222ENST00000566083 MFSD14CQ5VZR4 134 aa17.93■□□□□ 0.46
CLN3-222ENST00000566083 CHRDL2Q6WN34 429 aa17.93■□□□□ 0.46
CLN3-222ENST00000566083 DCTPP1Q9H773 170 aa17.93■□□□□ 0.46
CLN3-222ENST00000566083 A0A1W2PPC1 479 aa17.92■□□□□ 0.46
CLN3-222ENST00000566083 SPDYE16A6NNV3 312 aaPredicted RBP17.92■□□□□ 0.46
CLN3-222ENST00000566083 STRNO43815 780 aa17.92■□□□□ 0.46
CLN3-222ENST00000566083 WDR78Q5VTH9 848 aa17.92■□□□□ 0.46
CLN3-222ENST00000566083 SLC4A4Q9Y6R1 1079 aa17.92■□□□□ 0.46
CLN3-222ENST00000566083 USP17L12C9JPN9 530 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 USP17L21D6R901 530 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 PEX10O60683 326 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 CNMDO75829 334 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 ZFYP08048 801 aaPredicted RBP17.91■□□□□ 0.46
CLN3-222ENST00000566083 HOXC6P09630 235 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 PTPREP23469 700 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 ICA1Q05084 483 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 TRIM32Q13049 653 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 C20orf194Q5TEA3 1177 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 C16orf86Q6ZW13 317 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms