RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ZCCHC17Q9NP64 241 aaKnown RBP11.79□□□□□ -0.52
CLN3-220ENST00000566040 GINM1Q9NU53 330 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 SWAP70Q9UH65 585 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 LCTP09848 1927 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 PDHXO00330 501 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 PEX10O60683 326 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 PRDM1O75626 825 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 CENPBP07199 599 aaPredicted RBP11.78□□□□□ -0.52
CLN3-220ENST00000566040 CYP2C8P10632 490 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 BCRP11274 1271 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 BACE1P56817 501 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 PTH1RQ03431 593 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 CTDSPL2Q05D32 466 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 C17orf99Q6UX52 265 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 STK11IPQ8N1F8 1099 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 CCDC136Q96JN2 1154 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 TAOK2Q9UL54 1235 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 AGTPBP1Q9UPW5 1226 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 ZNF236Q9UL36 1845 aa11.78□□□□□ -0.52
CLN3-220ENST00000566040 ZNFX1Q9P2E3 1918 aaKnown RBP11.78□□□□□ -0.52
CLN3-220ENST00000566040 MINDY4BA8MYZ0 360 aa11.77□□□□□ -0.53
CLN3-220ENST00000566040 SGSM2O43147 1006 aa11.77□□□□□ -0.53
CLN3-220ENST00000566040 NOVP48745 357 aa11.77□□□□□ -0.53
CLN3-220ENST00000566040 TDO2P48775 406 aa11.77□□□□□ -0.53
CLN3-220ENST00000566040 TAF1CQ15572 869 aaPredicted RBP11.77□□□□□ -0.53
CLN3-220ENST00000566040 LRRFIP1Q32MZ4 808 aaKnown RBP11.77□□□□□ -0.53
CLN3-220ENST00000566040 BMP2KLQ5H9B9 411 aa11.77□□□□□ -0.53
CLN3-220ENST00000566040 PROCA1Q8NCQ7 364 aaPredicted RBP11.77□□□□□ -0.53
CLN3-220ENST00000566040 ARHGAP39Q9C0H5 1083 aa11.77□□□□□ -0.53
CLN3-220ENST00000566040 KIAA1683Q9H0B3 1180 aa11.77□□□□□ -0.53
CLN3-220ENST00000566040 NEDD4P46934 1319 aa11.77□□□□□ -0.53
CLN3-220ENST00000566040 TNRC18O15417 2968 aaPredicted RBP11.76□□□□□ -0.53
CLN3-220ENST00000566040 TLR2O60603 784 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 ALDH1A1P00352 501 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 RAB3GAP1Q15042 981 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 GADL1Q6ZQY3 521 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 TMEM179Q6ZVK1 233 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 RASGRP2Q7LDG7 609 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 TBC1D2Q9BYX2 928 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 NAPBQ9H115 298 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 IL17RBQ9NRM6 502 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 PPP4R2Q9NY27 417 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 SLC45A1Q9Y2W3 748 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 RAD50Q92878 1312 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 FRMPD3Q5JV73 1810 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 PLXNA1Q9UIW2 1896 aa11.76□□□□□ -0.53
CLN3-220ENST00000566040 USP17L10C9JJH3 530 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 ORC4O43929 436 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 CNMDO75829 334 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 APPP05067 770 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 VCAM1P19320 739 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 HAND2P61296 217 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 ERICH6BQ5W0A0 696 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 BEGAINQ9BUH8 593 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 DSCC1Q9BVC3 393 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 ASCC2Q9H1I8 757 aaPredicted RBP11.75□□□□□ -0.53
CLN3-220ENST00000566040 DIAPH3Q9NSV4 1193 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 TMX2Q9Y320 296 aa11.75□□□□□ -0.53
CLN3-220ENST00000566040 NMT2O60551 498 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 EEF2P13639 858 aaKnown RBP11.74□□□□□ -0.53
CLN3-220ENST00000566040 HOXA7P31268 230 aaPredicted RBP11.74□□□□□ -0.53
CLN3-220ENST00000566040 ZYXQ15942 572 aaKnown RBP11.74□□□□□ -0.53
CLN3-220ENST00000566040 FAM47AQ5JRC9 791 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 STOX1Q6ZVD7 989 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 FASTKD5Q7L8L6 764 aaKnown RBP11.74□□□□□ -0.53
CLN3-220ENST00000566040 NEDD1Q8NHV4 660 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 CD99L2Q8TCZ2 262 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 CEP95Q96GE4 821 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 CCDC17Q96LX7 622 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 TRIM34Q9BYJ4 488 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 LSG1Q9H089 658 aaKnown RBP11.74□□□□□ -0.53
CLN3-220ENST00000566040 AS3MTQ9HBK9 375 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 TXNRD2Q9NNW7 524 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 CPA4Q9UI42 421 aa11.74□□□□□ -0.53
CLN3-220ENST00000566040 LRRC37A2A6NM11 1700 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 C19orf81C9J6K1 198 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 HIP1O00291 1037 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 MPHOSPH10O00566 681 aaKnown RBP11.73□□□□□ -0.53
CLN3-220ENST00000566040 FKTNO75072 461 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 MYH6P13533 1939 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 ICA1Q05084 483 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 RCSD1Q6JBY9 416 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 STAG1Q8WVM7 1258 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 ESYT1Q9BSJ8 1104 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 NACAP1Q9BZK3 213 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 MTMR4Q9NYA4 1195 aa11.73□□□□□ -0.53
CLN3-220ENST00000566040 NEFLP07196 543 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 USP17L2Q6R6M4 530 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 OTOP1Q7RTM1 612 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 DDRGK1Q96HY6 314 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 TRIM47Q96LD4 638 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 P2RX7Q99572 595 aaKnown RBP11.72□□□□□ -0.53
CLN3-220ENST00000566040 MCOLN1Q9GZU1 580 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 VCPKMTQ9H867 229 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 ZFYVE28Q9HCC9 887 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 NYAP2Q9P242 653 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 RBPJLQ9UBG7 517 aa11.72□□□□□ -0.53
CLN3-220ENST00000566040 SPDYE16A6NNV3 312 aaPredicted RBP11.71□□□□□ -0.53
CLN3-220ENST00000566040 CYP21A2P08686 494 aa11.71□□□□□ -0.53
CLN3-220ENST00000566040 HERVK_113P62684 666 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms