RNA–Protein interactions for RNA: ENST00000564676.5

CDH1-206, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-206ENST00000564676 MCOLN1Q9GZU1 580 aa11.88□□□□□ -0.51
CDH1-206ENST00000564676 NAPBQ9H115 298 aa11.88□□□□□ -0.51
CDH1-206ENST00000564676 AGTPBP1Q9UPW5 1226 aa11.88□□□□□ -0.51
CDH1-206ENST00000564676 DDX60LQ5H9U9 1706 aaKnown RBP11.88□□□□□ -0.51
CDH1-206ENST00000564676 PTPRFP10586 1907 aa11.88□□□□□ -0.51
CDH1-206ENST00000564676 CYP2C8P10632 490 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 SDSP20132 328 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 OSBPP22059 807 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 NMIQ13287 307 aaPredicted RBP11.87□□□□□ -0.51
CDH1-206ENST00000564676 PABPC4Q13310 644 aaKnown RBP eCLIP11.87□□□□□ -0.51
CDH1-206ENST00000564676 SH3D19Q5HYK7 790 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 TREML2Q5T2D2 321 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 USP17L2Q6R6M4 530 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 TMEM179Q6ZVK1 233 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 C16orf86Q6ZW13 317 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 CD99L2Q8TCZ2 262 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 CCDC17Q96LX7 622 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 MKNK2Q9HBH9 465 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 EPB41L4AQ9HCS5 686 aaPredicted RBP11.87□□□□□ -0.51
CDH1-206ENST00000564676 CPA4Q9UI42 421 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 PNMA3Q9UL41 463 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 SLC45A1Q9Y2W3 748 aa11.87□□□□□ -0.51
CDH1-206ENST00000564676 A0A0D9SFI3 127 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 HIP1O00291 1037 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 CENPBP07199 599 aaPredicted RBP11.86□□□□□ -0.51
CDH1-206ENST00000564676 SLC3A2P08195 630 aaKnown RBP11.86□□□□□ -0.51
CDH1-206ENST00000564676 AKR1B1P15121 316 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 GUCY1A2P33402 732 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 KIF22Q14807 665 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 ARHGEF6Q15052 776 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 ZYXQ15942 572 aaKnown RBP11.86□□□□□ -0.51
CDH1-206ENST00000564676 TTC22Q5TAA0 569 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 C17orf99Q6UX52 265 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 SMCR8Q8TEV9 937 aaPredicted RBP11.86□□□□□ -0.51
CDH1-206ENST00000564676 DIAPH3Q9NSV4 1193 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 TRIM17Q9Y577 477 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 MYH8P13535 1937 aa11.86□□□□□ -0.51
CDH1-206ENST00000564676 ECM2O94769 699 aaPredicted RBP11.85□□□□□ -0.51
CDH1-206ENST00000564676 USP14P54578 494 aa11.85□□□□□ -0.51
CDH1-206ENST00000564676 IRX3P78415 501 aaPredicted RBP11.85□□□□□ -0.51
CDH1-206ENST00000564676 PKN2Q16513 984 aaKnown RBP11.85□□□□□ -0.51
CDH1-206ENST00000564676 CWC27Q6UX04 472 aaKnown RBP11.85□□□□□ -0.51
CDH1-206ENST00000564676 CENPQQ7L2Z9 268 aaPredicted RBP11.85□□□□□ -0.51
CDH1-206ENST00000564676 ZNF444Q8N0Y2 327 aaPredicted RBP11.85□□□□□ -0.51
CDH1-206ENST00000564676 ACER1Q8TDN7 264 aa11.85□□□□□ -0.51
CDH1-206ENST00000564676 ABHD8Q96I13 439 aa11.85□□□□□ -0.51
CDH1-206ENST00000564676 EFCC1Q9HA90 598 aa11.85□□□□□ -0.51
CDH1-206ENST00000564676 ZNF287Q9HBT7 754 aa11.85□□□□□ -0.51
CDH1-206ENST00000564676 EMILIN3Q9NT22 766 aa11.85□□□□□ -0.51
CDH1-206ENST00000564676 MFAP1P55081 439 aaKnown RBP11.84□□□□□ -0.51
CDH1-206ENST00000564676 PDE4BQ07343 736 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 PPARAQ07869 468 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 IFFO2Q5TF58 517 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 VPS53Q5VIR6 699 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 OTOP1Q7RTM1 612 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 CCDC136Q96JN2 1154 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 KIAA1683Q9H0B3 1180 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 ASCC2Q9H1I8 757 aaPredicted RBP11.84□□□□□ -0.51
CDH1-206ENST00000564676 ARHGEF10LQ9HCE6 1279 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 CCDC171Q6TFL3 1326 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 ADGRA2Q96PE1 1338 aa11.84□□□□□ -0.51
CDH1-206ENST00000564676 PRDM1O75626 825 aa11.83□□□□□ -0.52
CDH1-206ENST00000564676 HSPD1P10809 573 aaKnown RBP11.83□□□□□ -0.52
CDH1-206ENST00000564676 BCRP11274 1271 aa11.83□□□□□ -0.52
CDH1-206ENST00000564676 GSPT1P15170 499 aaKnown RBP11.83□□□□□ -0.52
CDH1-206ENST00000564676 HOXA7P31268 230 aaPredicted RBP11.83□□□□□ -0.52
CDH1-206ENST00000564676 LACTBP83111 547 aaPredicted RBP11.83□□□□□ -0.52
CDH1-206ENST00000564676 ATP2B2Q01814 1243 aa11.83□□□□□ -0.52
CDH1-206ENST00000564676 ICA1Q05084 483 aa11.83□□□□□ -0.52
CDH1-206ENST00000564676 ALX1Q15699 326 aa11.83□□□□□ -0.52
CDH1-206ENST00000564676 FBXO46Q6PJ61 603 aaPredicted RBP11.83□□□□□ -0.52
CDH1-206ENST00000564676 ZNF589Q86UQ0 364 aaPredicted RBP11.83□□□□□ -0.52
CDH1-206ENST00000564676 ANKRD13CQ8N6S4 541 aa11.83□□□□□ -0.52
CDH1-206ENST00000564676 C12orf42Q96LP6 360 aa11.83□□□□□ -0.52
CDH1-206ENST00000564676 KANSL2Q9H9L4 492 aa11.83□□□□□ -0.52
CDH1-206ENST00000564676 ROBO3Q96MS0 1386 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 A0A1W2PRG0 241 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 CCDC85CA6NKD9 419 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 FOXP2O15409 715 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 FMNL1O95466 1100 aaPredicted RBP11.82□□□□□ -0.52
CDH1-206ENST00000564676 FGAP02671 866 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 RASA1P20936 1047 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 PSMC4P43686 418 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 GCLCP48506 637 aaPredicted RBP11.82□□□□□ -0.52
CDH1-206ENST00000564676 CLEC10AQ8IUN9 316 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 ARHGAP39Q9C0H5 1083 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 SH2D4AQ9H788 454 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 LOC285556D6RIA3 1793 aa11.82□□□□□ -0.52
CDH1-206ENST00000564676 SPDYE4A6NLX3 237 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 USP17L15C9J2P7 530 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 USP17L13C9JLJ4 530 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 USP17L11C9JVI0 530 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 USP17L18D6R9N7 530 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 USP17L22D6RA61 530 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 USP17L17D6RBQ6 530 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 USP17L19D6RCP7 530 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 USP17L20D6RJB6 530 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 EEF2P13639 858 aaKnown RBP11.81□□□□□ -0.52
CDH1-206ENST00000564676 VCAM1P19320 739 aa11.81□□□□□ -0.52
CDH1-206ENST00000564676 HOXD10P28358 340 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms