RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PTPREP23469 700 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 USP17L24Q0WX57 530 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 TFCP2Q12800 502 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 SHROOM1Q2M3G4 852 aaPredicted RBP9.02□□□□□ -0.97
VPS4A-203ENST00000564399 TRIM60Q495X7 471 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 TJAP1Q5JTD0 557 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 POTEEQ6S8J3 1075 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 NPLOC4Q8TAT6 608 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 TGFBRAP1Q8WUH2 860 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 EMILIN3Q9NT22 766 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 GINM1Q9NU53 330 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 AATFQ9NY61 560 aaKnown RBP eCLIP9.02□□□□□ -0.97
VPS4A-203ENST00000564399 ZBTB21Q9ULJ3 1066 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 VCANP13611 3396 aa9.02□□□□□ -0.97
VPS4A-203ENST00000564399 CNMDO75829 334 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 HLA-DOAP06340 250 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 ANO1Q5XXA6 986 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 NAA16Q6N069 864 aaPredicted RBP9.01□□□□□ -0.97
VPS4A-203ENST00000564399 ATF7IPQ6VMQ6 1270 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 SH3RF1Q7Z6J0 888 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 DPP9Q86TI2 863 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 FAM9BQ8IZU0 186 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 TRPV1Q8NER1 839 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 FERMT2Q96AC1 680 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 RNPC3Q96LT9 517 aaKnown RBP9.01□□□□□ -0.97
VPS4A-203ENST00000564399 DNAJC18Q9H819 358 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 SAP30BPQ9UHR5 308 aaKnown RBP9.01□□□□□ -0.97
VPS4A-203ENST00000564399 PALD1Q9ULE6 856 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 MYH1P12882 1939 aa9.01□□□□□ -0.97
VPS4A-203ENST00000564399 ZNFX1Q9P2E3 1918 aaKnown RBP9.01□□□□□ -0.97
VPS4A-203ENST00000564399 TMEM265A0A087WTH1 108 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 TRIM43BA6NCK2 446 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 GH2P01242 217 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 HOXC6P09630 235 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 CYBAP13498 195 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 ADCYAP1R1P41586 468 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 GRB14Q14449 540 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 CATSPERGQ6ZRH7 1159 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 PPM1EQ8WY54 764 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 TRIM43Q96BQ3 446 aaPredicted RBP9□□□□□ -0.97
VPS4A-203ENST00000564399 PDLIM7Q9NR12 457 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 SMC4Q9NTJ3 1288 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 RAPGEFL1Q9UHV5 662 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 FLT1P17948 1338 aa9□□□□□ -0.97
VPS4A-203ENST00000564399 MYO5AQ9Y4I1 1855 aaKnown RBP9□□□□□ -0.97
VPS4A-203ENST00000564399 FOCADQ5VW36 1801 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 SRGAP3O43295 1099 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 UQCRFS1P1P0C7P4 283 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 ARID4AP29374 1257 aaPredicted RBP8.99□□□□□ -0.97
VPS4A-203ENST00000564399 MCAMP43121 646 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 USP14P54578 494 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 TLE2Q04725 743 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 GRIN2CQ14957 1233 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 RAB3GAP1Q15042 981 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 METTL16Q86W50 562 aaKnown RBP8.99□□□□□ -0.97
VPS4A-203ENST00000564399 USP38Q8NB14 1042 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 C12orf42Q96LP6 360 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 SNRKQ9NRH2 765 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 BTBD7Q9P203 1132 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 TACC3Q9Y6A5 838 aa8.99□□□□□ -0.97
VPS4A-203ENST00000564399 EYSQ5T1H1 3165 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 SEPT4O43236 478 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 ANP32CO43423 234 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 RAG1P15918 1043 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 VCAM1P19320 739 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 ADORA2AP29274 412 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 PPP4CP60510 307 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 SNX17Q15036 470 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 LRRC41Q15345 812 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 ALDH1L2Q3SY69 923 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 MEIS3Q99687 375 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 SLC5A4Q9NY91 659 aa8.98□□□□□ -0.97
VPS4A-203ENST00000564399 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.98□□□□□ -0.97
VPS4A-203ENST00000564399 TCF20Q9UGU0 1960 aaKnown RBP8.98□□□□□ -0.97
VPS4A-203ENST00000564399 BDP1A6H8Y1 2624 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.97□□□□□ -0.97
VPS4A-203ENST00000564399 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.97□□□□□ -0.97
VPS4A-203ENST00000564399 SPDYE16A6NNV3 312 aaPredicted RBP8.97□□□□□ -0.97
VPS4A-203ENST00000564399 E9PSI1 815 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 STRNO43815 780 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 CLTBP09497 229 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 DNAJB2P25686 324 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 EPHB4P54760 987 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 FPGSQ05932 587 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 G3BP1Q13283 466 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS4A-203ENST00000564399 FAM47AQ5JRC9 791 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 TTC39AQ5SRH9 613 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 PRAMEF19Q5SWL8 479 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 OLFML2BQ68BL8 750 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 LBX2Q6XYB7 198 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 ADGRA1Q86SQ6 560 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 ACER1Q8TDN7 264 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 FAM122AQ96E09 287 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 GAS2L1Q99501 681 aaPredicted RBP8.97□□□□□ -0.97
VPS4A-203ENST00000564399 MOV10L1Q9BXT6 1211 aaKnown RBP8.97□□□□□ -0.97
VPS4A-203ENST00000564399 KIAA1683Q9H0B3 1180 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 ZNF576Q9H609 170 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 RPAP3Q9H6T3 665 aaPredicted RBP8.97□□□□□ -0.97
VPS4A-203ENST00000564399 CABP5Q9NP86 173 aa8.97□□□□□ -0.97
VPS4A-203ENST00000564399 NOB1Q9ULX3 412 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms