RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 PNPLA7Q6ZV29 1317 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 TRIM75PA6NK02 468 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 ARHGAP29Q52LW3 1261 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 CTR9Q6PD62 1173 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 CATIPQ7Z7H3 387 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 ERO1AQ96HE7 468 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 CARD6Q9BX69 1037 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 STK36Q9NRP7 1315 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 CCDC196A0A1B0GTZ2 297 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 CBFA2T2O43439 604 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 CCT6AP40227 531 aaKnown RBP15.39■□□□□ 0.05
CLK3-215ENST00000564353 CAVIN4Q5BKX8 364 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 RASGRP2Q7LDG7 609 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 GPKOWQ92917 476 aaPredicted RBP eCLIP15.39■□□□□ 0.05
CLK3-215ENST00000564353 BAG1Q99933 345 aaPredicted RBP15.39■□□□□ 0.05
CLK3-215ENST00000564353 LZTFL1Q9NQ48 299 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 ZNF446Q9NWS9 450 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 TAF1P21675 1872 aa15.39■□□□□ 0.05
CLK3-215ENST00000564353 SOWAHDA6NJG2 315 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 KRT2P35908 639 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 GNG11P61952 73 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 ETF1P62495 437 aaKnown RBP15.38■□□□□ 0.05
CLK3-215ENST00000564353 TBC1D9BQ66K14 1250 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 REXO1L1PQ8IX06 675 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 SRBD1Q8N5C6 995 aaKnown RBP15.38■□□□□ 0.05
CLK3-215ENST00000564353 CDC5LQ99459 802 aaKnown RBP15.38■□□□□ 0.05
CLK3-215ENST00000564353 PPP2R2CQ9Y2T4 447 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 SRPRBQ9Y5M8 271 aaKnown RBP15.38■□□□□ 0.05
CLK3-215ENST00000564353 MECOMQ03112 1051 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 TRIM65Q6PJ69 517 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 LINC00116Q8NCU8 138 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 CPVLQ9H3G5 476 aa15.38■□□□□ 0.05
CLK3-215ENST00000564353 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLK3-215ENST00000564353 TFRCP02786 760 aaKnown RBP15.37■□□□□ 0.05
CLK3-215ENST00000564353 PTGDRQ13258 359 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 MORC3Q14149 939 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 TMEM139Q8IV31 216 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 ZNF397Q8NF99 534 aaPredicted RBP15.37■□□□□ 0.05
CLK3-215ENST00000564353 DDX41Q9UJV9 622 aaKnown RBP15.37■□□□□ 0.05
CLK3-215ENST00000564353 SPATA31A1Q5TZJ5 1347 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 FAM237AA0A1B0GTK4 181 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 PSDA5PKW4 1024 aaPredicted RBP15.37■□□□□ 0.05
CLK3-215ENST00000564353 SEC31AO94979 1220 aaKnown RBP15.37■□□□□ 0.05
CLK3-215ENST00000564353 USP17L8P0C7I0 530 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 DPYDQ12882 1025 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 FAM98CQ17RN3 349 aaKnown RBP15.37■□□□□ 0.05
CLK3-215ENST00000564353 PARP10Q53GL7 1025 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 IQCA1Q86XH1 822 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 TC2NQ8N9U0 490 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 DYNLL2Q96FJ2 89 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 GNL3LQ9NVN8 582 aaKnown RBP15.37■□□□□ 0.05
CLK3-215ENST00000564353 OGFRQ9NZT2 677 aa15.37■□□□□ 0.05
CLK3-215ENST00000564353 HOOK1Q9UJC3 728 aaKnown RBP15.37■□□□□ 0.05
CLK3-215ENST00000564353 PAGE5Q96GU1 130 aa15.36■□□□□ 0.05
CLK3-215ENST00000564353 NLRP5P59047 1200 aa15.36■□□□□ 0.05
CLK3-215ENST00000564353 TROAPQ12815 778 aa15.36■□□□□ 0.05
CLK3-215ENST00000564353 UTP14CQ5TAP6 766 aaKnown RBP15.36■□□□□ 0.05
CLK3-215ENST00000564353 MNS1Q8NEH6 495 aa15.36■□□□□ 0.05
CLK3-215ENST00000564353 CTNND2Q9UQB3 1225 aa15.36■□□□□ 0.05
CLK3-215ENST00000564353 EP400Q96L91 3159 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 COL16A1Q07092 1604 aaPredicted RBP15.35■□□□□ 0.05
CLK3-215ENST00000564353 TSPY2A6NKD2 308 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 FUT2Q10981 343 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 SPECC1LQ69YQ0 1117 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 ZNF771Q7L3S4 317 aaPredicted RBP15.35■□□□□ 0.05
CLK3-215ENST00000564353 TMTC2Q8N394 836 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 PHF20Q9BVI0 1012 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 MYH3P11055 1940 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 SARSP49591 514 aaKnown RBP15.35■□□□□ 0.05
CLK3-215ENST00000564353 RNF26Q9BY78 433 aaPredicted RBP15.35■□□□□ 0.05
CLK3-215ENST00000564353 PP2D1A8MPX8 630 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 XBP1P17861 261 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 TTC38Q5R3I4 469 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 AMIGO3Q86WK7 504 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 SLC44A5Q8NCS7 719 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 MRPL44Q9H9J2 332 aaKnown RBP15.35■□□□□ 0.05
CLK3-215ENST00000564353 MCM9Q9NXL9 1143 aa15.35■□□□□ 0.05
CLK3-215ENST00000564353 ABL1P00519 1130 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 ZNF18P17022 549 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 CLCN6P51797 869 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 RBL2Q08999 1139 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 STAG2Q8N3U4 1231 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 MLKLQ8NB16 471 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 NSUN4Q96CB9 384 aaKnown RBP15.34■□□□□ 0.05
CLK3-215ENST00000564353 CEP131Q9UPN4 1083 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 ECM29Q5VYK3 1845 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 PES1O00541 588 aaKnown RBP15.34■□□□□ 0.05
CLK3-215ENST00000564353 GOLGA8HP0CJ92 632 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 CUL4BQ13620 913 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 DIXDC1Q155Q3 683 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 NPY5RQ15761 445 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 CCDC93Q567U6 631 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 TEX35Q5T0J7 233 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 UBXN4Q92575 508 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 FEZ1Q99689 392 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 VPS16Q9H269 839 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 L2HGDHQ9H9P8 463 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 DCP1AQ9NPI6 582 aaPredicted RBP15.34■□□□□ 0.05
CLK3-215ENST00000564353 SYNRGQ9UMZ2 1314 aa15.34■□□□□ 0.05
CLK3-215ENST00000564353 SRCAPQ6ZRS2 3230 aa15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms