RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 GSTM4Q03013 218 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 LCE3BQ5TA77 95 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 GJD3Q8N144 294 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 FBXL6Q8N531 539 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 DNAJC5GQ8N7S2 189 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 SMG8Q8ND04 991 aaKnown RBP7.73□□□□□ -1.17
VPS35-204ENST00000563884 TMPRSS13Q9BYE2 586 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 BHLHE41Q9C0J9 482 aaPredicted RBP7.73□□□□□ -1.17
VPS35-204ENST00000563884 SOX17Q9H6I2 414 aaPredicted RBP7.73□□□□□ -1.17
VPS35-204ENST00000563884 CCDC87Q9NVE4 849 aa7.73□□□□□ -1.17
VPS35-204ENST00000563884 TECPR2O15040 1411 aa7.72□□□□□ -1.17
VPS35-204ENST00000563884 LRRC37A3O60309 1634 aa7.72□□□□□ -1.17
VPS35-204ENST00000563884 METTL12A8MUP2 240 aa7.72□□□□□ -1.17
VPS35-204ENST00000563884 POLR3DP05423 398 aaPredicted RBP7.72□□□□□ -1.17
VPS35-204ENST00000563884 TAL1P17542 331 aaPredicted RBP7.72□□□□□ -1.17
VPS35-204ENST00000563884 POLD1P28340 1107 aa7.72□□□□□ -1.17
VPS35-204ENST00000563884 USP11P51784 963 aa7.72□□□□□ -1.17
VPS35-204ENST00000563884 ARHGAP4P98171 946 aa7.72□□□□□ -1.17
VPS35-204ENST00000563884 NFKBIBQ15653 356 aa7.72□□□□□ -1.17
VPS35-204ENST00000563884 PEAR1Q5VY43 1037 aaPredicted RBP7.72□□□□□ -1.17
VPS35-204ENST00000563884 ZFYVE28Q9HCC9 887 aa7.72□□□□□ -1.17
VPS35-204ENST00000563884 GNEQ9Y223 722 aaKnown RBP7.72□□□□□ -1.17
VPS35-204ENST00000563884 PIK3C2AO00443 1686 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 ATP7BP35670 1465 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 FAM95CA0A1B0GW59 222 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 BRD1O95696 1058 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 DLGAP3O95886 979 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 DRD2P14416 443 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 SLC15A2Q16348 729 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 EXOSC6Q5RKV6 272 aaKnown RBP7.71□□□□□ -1.18
VPS35-204ENST00000563884 OSBPL1AQ9BXW6 950 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 SUGCTQ9HAC7 445 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 GOLGA2P5Q9HBQ8 144 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 PRDM11Q9NQV5 511 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 PIM2Q9P1W9 311 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 LEMD3Q9Y2U8 911 aa7.71□□□□□ -1.18
VPS35-204ENST00000563884 PAPPAQ13219 1627 aa7.7□□□□□ -1.18
VPS35-204ENST00000563884 TNS2Q63HR2 1409 aa7.7□□□□□ -1.18
VPS35-204ENST00000563884 TIAF1O95411 115 aa7.7□□□□□ -1.18
VPS35-204ENST00000563884 HOXA10P31260 410 aaPredicted RBP7.7□□□□□ -1.18
VPS35-204ENST00000563884 PAOXQ6QHF9 649 aa7.7□□□□□ -1.18
VPS35-204ENST00000563884 ZNF526Q8TF50 670 aaPredicted RBP7.7□□□□□ -1.18
VPS35-204ENST00000563884 PDGFDQ9GZP0 370 aaPredicted RBP7.7□□□□□ -1.18
VPS35-204ENST00000563884 ITSN1Q15811 1721 aa7.69□□□□□ -1.18
VPS35-204ENST00000563884 EIF4EBP3O60516 100 aaPredicted RBP7.69□□□□□ -1.18
VPS35-204ENST00000563884 TOMM70O94826 608 aa7.69□□□□□ -1.18
VPS35-204ENST00000563884 F13BP05160 661 aa7.69□□□□□ -1.18
VPS35-204ENST00000563884 TXKP42681 527 aa7.69□□□□□ -1.18
VPS35-204ENST00000563884 CCER1Q8TC90 406 aaPredicted RBP7.69□□□□□ -1.18
VPS35-204ENST00000563884 FBLIM1Q8WUP2 373 aa7.69□□□□□ -1.18
VPS35-204ENST00000563884 THRAP3Q9Y2W1 955 aaKnown RBP7.69□□□□□ -1.18
VPS35-204ENST00000563884 NHSQ6T4R5 1651 aa7.69□□□□□ -1.18
VPS35-204ENST00000563884 SSH2Q76I76 1423 aa7.69□□□□□ -1.18
VPS35-204ENST00000563884 TUBGCP6Q96RT7 1819 aa7.68□□□□□ -1.18
VPS35-204ENST00000563884 A0A096LPE4 126 aa7.68□□□□□ -1.18
VPS35-204ENST00000563884 A0A1W2PPZ6 126 aa7.68□□□□□ -1.18
VPS35-204ENST00000563884 H3BRB1 525 aa7.68□□□□□ -1.18
VPS35-204ENST00000563884 CDPF1Q6NVV7 123 aa7.68□□□□□ -1.18
VPS35-204ENST00000563884 GLYCTKQ8IVS8 523 aa7.68□□□□□ -1.18
VPS35-204ENST00000563884 YIPF2Q9BWQ6 316 aa7.68□□□□□ -1.18
VPS35-204ENST00000563884 TUT1Q9H6E5 874 aaKnown RBP7.68□□□□□ -1.18
VPS35-204ENST00000563884 ANGEL1Q9UNK9 670 aaKnown RBP7.68□□□□□ -1.18
VPS35-204ENST00000563884 SOX4Q06945 474 aaPredicted RBP7.67□□□□□ -1.18
VPS35-204ENST00000563884 PCDH1Q08174 1060 aa7.67□□□□□ -1.18
VPS35-204ENST00000563884 TCP11L2Q8N4U5 519 aa7.67□□□□□ -1.18
VPS35-204ENST00000563884 CITED4Q96RK1 184 aa7.67□□□□□ -1.18
VPS35-204ENST00000563884 LIN7BQ9HAP6 207 aa7.67□□□□□ -1.18
VPS35-204ENST00000563884 PCNTO95613 3336 aa7.67□□□□□ -1.18
VPS35-204ENST00000563884 GPRASP1Q5JY77 1395 aa7.67□□□□□ -1.18
VPS35-204ENST00000563884 KAT6BQ8WYB5 2073 aa7.67□□□□□ -1.18
VPS35-204ENST00000563884 A0A1W2PP55 124 aa7.66□□□□□ -1.18
VPS35-204ENST00000563884 EVA1CP58658 441 aa7.66□□□□□ -1.18
VPS35-204ENST00000563884 CCNJLQ8IV13 435 aa7.66□□□□□ -1.18
VPS35-204ENST00000563884 C2CD4AQ8NCU7 369 aaPredicted RBP7.66□□□□□ -1.18
VPS35-204ENST00000563884 TBC1D32Q96NH3 1257 aa7.66□□□□□ -1.18
VPS35-204ENST00000563884 CLEC4MQ9H2X3 399 aaPredicted RBP7.66□□□□□ -1.18
VPS35-204ENST00000563884 USP35Q9P2H5 1018 aa7.66□□□□□ -1.18
VPS35-204ENST00000563884 BRPF3Q9ULD4 1205 aa7.66□□□□□ -1.18
VPS35-204ENST00000563884 ANKARQ7Z5J8 1434 aa7.66□□□□□ -1.18
VPS35-204ENST00000563884 LMO7Q8WWI1 1683 aa7.66□□□□□ -1.18
VPS35-204ENST00000563884 TNRC6CQ9HCJ0 1690 aaKnown RBP7.66□□□□□ -1.18
VPS35-204ENST00000563884 SOWAHDA6NJG2 315 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 BCL9O00512 1426 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 IGHA2P01877 340 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 CYP11A1P05108 521 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 FOSL1P15407 271 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 MAOBP27338 520 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 GRIA4P48058 902 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 CPSF6Q16630 551 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS35-204ENST00000563884 TXNRD1Q16881 649 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 ZNF423Q2M1K9 1284 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 SPRED3Q2MJR0 410 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 TRPM1Q7Z4N2 1603 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 KRTAP19-1Q8IUB9 90 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 GALNT12Q8IXK2 581 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 SHISA5Q8N114 240 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 FAM129BQ96TA1 746 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 METTL22Q9BUU2 404 aaPredicted RBP7.65□□□□□ -1.18
VPS35-204ENST00000563884 ANKRD30BQ9BXX2 1392 aa7.65□□□□□ -1.18
VPS35-204ENST00000563884 RNF114Q9Y508 228 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms