RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 PRMT2P55345 433 aa16■□□□□ 0.15
CLK3-213ENST00000563842 IRX3P78415 501 aaPredicted RBP16■□□□□ 0.15
CLK3-213ENST00000563842 SHROOM1Q2M3G4 852 aaPredicted RBP16■□□□□ 0.15
CLK3-213ENST00000563842 TREML2Q5T2D2 321 aa16■□□□□ 0.15
CLK3-213ENST00000563842 IFNL3Q8IZI9 196 aa16■□□□□ 0.15
CLK3-213ENST00000563842 SEC62Q99442 399 aaKnown RBP16■□□□□ 0.15
CLK3-213ENST00000563842 KIAA1683Q9H0B3 1180 aa16■□□□□ 0.15
CLK3-213ENST00000563842 DOCK3Q8IZD9 2030 aa16■□□□□ 0.15
CLK3-213ENST00000563842 CYP2D7A0A087X1C5 515 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 SLC3A2P08195 630 aaKnown RBP15.99■□□□□ 0.15
CLK3-213ENST00000563842 BCRP11274 1271 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 MFAP1P55081 439 aaKnown RBP15.99■□□□□ 0.15
CLK3-213ENST00000563842 SEPT2Q15019 361 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 MCMDC2Q4G0Z9 681 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 SLC44A5Q8NCS7 719 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 GTF3C2Q8WUA4 911 aaPredicted RBP15.99■□□□□ 0.15
CLK3-213ENST00000563842 C12orf42Q96LP6 360 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 NAPBQ9H115 298 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 SH2D4AQ9H788 454 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 MKNK2Q9HBH9 465 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 ARHGEF10LQ9HCE6 1279 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 HPS5Q9UPZ3 1129 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 PTPN22Q9Y2R2 807 aa15.99■□□□□ 0.15
CLK3-213ENST00000563842 HIP1O00291 1037 aa15.98■□□□□ 0.15
CLK3-213ENST00000563842 GUCY1A2P33402 732 aa15.98■□□□□ 0.15
CLK3-213ENST00000563842 EVX2Q03828 476 aa15.98■□□□□ 0.15
CLK3-213ENST00000563842 ASCC2Q9H1I8 757 aaPredicted RBP15.98■□□□□ 0.15
CLK3-213ENST00000563842 ROBO3Q96MS0 1386 aa15.98■□□□□ 0.15
CLK3-213ENST00000563842 MYH4Q9Y623 1939 aa15.98■□□□□ 0.15
CLK3-213ENST00000563842 ZSWIM8A7E2V4 1837 aa15.97■□□□□ 0.15
CLK3-213ENST00000563842 FMNL1O95466 1100 aaPredicted RBP15.97■□□□□ 0.15
CLK3-213ENST00000563842 AKR1B1P15121 316 aa15.97■□□□□ 0.15
CLK3-213ENST00000563842 PSMC4P43686 418 aa15.97■□□□□ 0.15
CLK3-213ENST00000563842 FCGRTP55899 365 aa15.97■□□□□ 0.15
CLK3-213ENST00000563842 FAM110CQ1W6H9 321 aa15.97■□□□□ 0.15
CLK3-213ENST00000563842 EPB41L4AQ9HCS5 686 aaPredicted RBP15.97■□□□□ 0.15
CLK3-213ENST00000563842 EMILIN3Q9NT22 766 aa15.97■□□□□ 0.15
CLK3-213ENST00000563842 USP17L15C9J2P7 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 USP17L13C9JLJ4 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 USP17L11C9JVI0 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 USP17L18D6R9N7 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 USP17L22D6RA61 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 USP17L17D6RBQ6 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 USP17L19D6RCP7 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 USP17L20D6RJB6 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 ICA1Q05084 483 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 PDE4BQ07343 736 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 USP17L24Q0WX57 530 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 ZYXQ15942 572 aaKnown RBP15.96■□□□□ 0.15
CLK3-213ENST00000563842 ZNF444Q8N0Y2 327 aaPredicted RBP15.96■□□□□ 0.15
CLK3-213ENST00000563842 ANKRD13CQ8N6S4 541 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 ACER1Q8TDN7 264 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 KANSL2Q9H9L4 492 aa15.96■□□□□ 0.15
CLK3-213ENST00000563842 GREB1LQ9C091 1923 aaPredicted RBP15.96■□□□□ 0.14
CLK3-213ENST00000563842 SDSP20132 328 aa15.95■□□□□ 0.14
CLK3-213ENST00000563842 ALX1Q15699 326 aa15.95■□□□□ 0.14
CLK3-213ENST00000563842 CCDC129Q6ZRS4 1044 aa15.95■□□□□ 0.14
CLK3-213ENST00000563842 NBPF11Q86T75 865 aa15.95■□□□□ 0.14
CLK3-213ENST00000563842 DIAPH3Q9NSV4 1193 aa15.95■□□□□ 0.14
CLK3-213ENST00000563842 HERVK_113P62684 666 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 PPARAQ07869 468 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 NMIQ13287 307 aaPredicted RBP15.94■□□□□ 0.14
CLK3-213ENST00000563842 LPAR1Q92633 364 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 TRIM47Q96LD4 638 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 FAM227BQ96M60 508 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 P2RX7Q99572 595 aaKnown RBP15.94■□□□□ 0.14
CLK3-213ENST00000563842 ARHGAP39Q9C0H5 1083 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 SRRDQ9UH36 339 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 TMX2Q9Y320 296 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 CCDC171Q6TFL3 1326 aa15.94■□□□□ 0.14
CLK3-213ENST00000563842 KIAA0100Q14667 2235 aaKnown RBP15.93■□□□□ 0.14
CLK3-213ENST00000563842 A0A0D9SFI3 127 aa15.93■□□□□ 0.14
CLK3-213ENST00000563842 SMIM22K7EJ46 135 aa15.93■□□□□ 0.14
CLK3-213ENST00000563842 TNRC18O15417 2968 aaPredicted RBP15.93■□□□□ 0.14
CLK3-213ENST00000563842 VCAM1P19320 739 aa15.93■□□□□ 0.14
CLK3-213ENST00000563842 RASA1P20936 1047 aa15.93■□□□□ 0.14
CLK3-213ENST00000563842 CATSPERGQ6ZRH7 1159 aa15.93■□□□□ 0.14
CLK3-213ENST00000563842 STK11IPQ8N1F8 1099 aa15.93■□□□□ 0.14
CLK3-213ENST00000563842 COA7Q96BR5 231 aa15.93■□□□□ 0.14
CLK3-213ENST00000563842 MORF4L1Q9UBU8 362 aa15.93■□□□□ 0.14
CLK3-213ENST00000563842 A0A1W2PRG0 241 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 TNPO2O14787 897 aaKnown RBP15.92■□□□□ 0.14
CLK3-213ENST00000563842 EEF2P13639 858 aaKnown RBP15.92■□□□□ 0.14
CLK3-213ENST00000563842 PDE4AP27815 886 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 CAP1Q01518 475 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 ATP2B2Q01814 1243 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 SLC9C1Q4G0N8 1177 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 PPP4R3BQ5MIZ7 849 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 TTC22Q5TAA0 569 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 PRPF38BQ5VTL8 546 aaKnown RBP15.92■□□□□ 0.14
CLK3-213ENST00000563842 GPRC5AQ8NFJ5 357 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 RAET1EQ8TD07 263 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 RPAP3Q9H6T3 665 aaPredicted RBP15.92■□□□□ 0.14
CLK3-213ENST00000563842 VCPKMTQ9H867 229 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 GOPCQ9HD26 462 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 PTCH2Q9Y6C5 1203 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 ZMYM6O95789 1325 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 MYPNQ86TC9 1320 aa15.92■□□□□ 0.14
CLK3-213ENST00000563842 ECM2O94769 699 aaPredicted RBP15.91■□□□□ 0.14
CLK3-213ENST00000563842 HSPD1P10809 573 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms